Gene annotation
| Transcriptome id | Sobic.003G361900.1 |
|---|---|
| Synonym | Sb03g040360 |
| Functional annotation | dehydrodolichyl diphosphate synthase, putative, expressed |
| UniProt | C5XQG8 |
| Pfam | PF01255 |
| Panther DB | PTHR10291 PTHR10291:SF6 |
| NCBI CDD | KOG1602; Cis-prenyltransferase |
| KEGG Orthology | K11778; DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase |
| Gene Ontology | GO:0016765; transferase activity, transferring alkyl or aryl (other than methyl) groups |
Orthologs (automatic annotation)
| TAIR | AT5G58770 : Undecaprenyl pyrophosphate synthetase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g63830.1 : dehydrodolichyl diphosphate synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a039598 , Zm00025a047858 , Zm00025a045903 |
| Brachypodium | KQK10656 |
| Barley | HORVU3Hr1G084590.3 , HORVU3Hr1G084590.2 , HORVU3Hr1G084590.1 , HORVU3Hr1G084590.7 , HORVU3Hr1G084590.6 , HORVU3Hr1G084590.5 , HORVU3Hr1G084590.4 , HORVU3Hr1G084590.8 |
| Wheat | TraesCS3B02G402000 , TraesCSU02G182000 , TraesCS3A02G370100 , TraesCS4B02G379000 , TraesCS3D02G363000 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G111300 | transporter family protein, putative, expressed | - |
| 2 | Sobic.010G130800 | Acyl activating enzyme 1 AAE1 (At)(PubMedID : 27208977)@AMP-binding enzyme, putative, expressed | K00666: fatty-acyl-CoA synthase |
| 3 | Sobic.001G320700 | prephenate dehydratase domain containing protein, expressed | - |
| 4 | Sobic.002G046900 | HNH endonuclease domain-containing protein, putative, expressed | - |
| 5 | Sobic.006G201100 | peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 6 | Sobic.005G045200 | homeobox domain containing protein, expressed | - |
| 7 | Sobic.004G164200 | heavy metal-associated domain containing protein, expressed | K07213: ATOX1, ATX1, copZ, copper chaperone |
| 8 | Sobic.001G448300 | phytosulfokines precursor, putative, expressed | - |
| 9 | Sobic.004G068700 | cytochrome P450 71D10, putative, expressed | - |
| 10 | Sobic.009G205700 | anthocyanidin 5,3-O-glucosyltransferase, putative, expressed | - |
| 11 | Sobic.001G340700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@EARLY flowering protein, putative, expressed | - |
| 12 | Sobic.004G142800 | similar to Cysteine proteinase 1 precursor(PubMedID : 29862293)@"As a homologous gene of the drought stress-responsive gene RD19 of Arabidopsis, SbRD19 overexpression in Arabidopsis improved the drought tolerance of plants relative to wild-type plants."(PubMedID : 32112957)@cysteine proteinase 1 precursor, putative, expressed | K01373: cathepsin F |
| 13 | Sobic.009G141400 | transcriptional regulator, putative, expressed | - |
| 14 | Sobic.006G052200 | nodulin, putative, expressed | - |
| 15 | Sobic.001G161300 | mttA/Hcf106 family protein, putative, expressed | K03116: sec-independent protein translocase protein TatA |
| 16 | Sobic.001G179100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed | - |
| 17 | Sobic.003G261900 | expressed protein | - |
| 18 | Sobic.009G213800 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed | - |
| 19 | Sobic.010G207500 | homeobox protein knotted-1, putative, expressed | - |
| 20 | Sobic.003G125400 | Fe-S metabolism associated domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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