Gene annotation
Transcriptome id Sobic.003G125400.2,Sobic.003G125400.3,Sobic.003G125400.1
Synonym SUFE1, ATSUFE, Sb03g010600, EMB1374, CPSUFE
Functional annotation Fe-S metabolism associated domain containing protein, expressed
UniProt A0A1B6Q2S4
Pfam PF01722 PF02657
Panther DB PTHR12735 PTHR12735:SF20
NCBI CDD KOG2313; Stress-induced protein UVI31+
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G26500 : chloroplast sulfur E
RAP-DB (Rice) LOC_Os09g09790.1 : Fe-S metabolism associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035253
Brachypodium KQJ89640
Barley HORVU7Hr1G111120.13 , HORVU7Hr1G111120.12 , HORVU7Hr1G111120.11 , HORVU7Hr1G111120.10 , HORVU7Hr1G111120.14 , HORVU7Hr1G025870.1 , HORVU7Hr1G111120.8 , HORVU7Hr1G111120.3 , HORVU7Hr1G111120.2 , HORVU7Hr1G111120.1 , HORVU7Hr1G111120.7 , HORVU7Hr1G111120.6 , HORVU7Hr1G111120.5 , HORVU7Hr1G111120.4 , HORVU5Hr1G052770.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G125400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G144800 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
2 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
3 Sobic.002G424100 parvulin-type peptidyl prolyl cis/trans isomerase, putative, expressed -
4 Sobic.008G063200 expressed protein -
5 Sobic.002G246500 OTU-like cysteine protease family protein, putative, expressed -
6 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
7 Sobic.010G140600 bolA, putative, expressed -
8 Sobic.003G343400 sufB/sufD domain containing protein, putative, expressed -
9 Sobic.010G080300 peptidase, putative, expressed K01436: amidohydrolase
10 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
11 Sobic.006G024500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
12 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
13 Sobic.009G068300 chloroplast lumen common family protein, putative, expressed -
14 Sobic.003G421400 expressed protein -
15 Sobic.009G141400 transcriptional regulator, putative, expressed -
16 Sobic.001G286600 PAP fibrillin family domain containing protein, expressed -
17 Sobic.004G224500 OsClp3 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
18 Sobic.008G004700 NC domain-containing protein, putative, expressed -
19 Sobic.010G189200 pentatricopeptide, putative, expressed -
20 Sobic.010G058200 sulfiredoxin-1, putative, expressed K12260: sulfiredoxin


Gene co-expression network
sample Sobic003G125400 Sobic003G125400 Sobic008G144800 Sobic008G144800 Sobic003G125400--Sobic008G144800 Sobic006G110900 Sobic006G110900 Sobic003G125400--Sobic006G110900 Sobic002G424100 Sobic002G424100 Sobic003G125400--Sobic002G424100 Sobic008G063200 Sobic008G063200 Sobic003G125400--Sobic008G063200 Sobic002G246500 Sobic002G246500 Sobic003G125400--Sobic002G246500 Sobic003G310100 Sobic003G310100 Sobic003G125400--Sobic003G310100 Sobic010G140600 Sobic010G140600 Sobic003G125400--Sobic010G140600 Sobic003G343400 Sobic003G343400 Sobic003G125400--Sobic003G343400 Sobic010G080300 Sobic010G080300 Sobic003G125400--Sobic010G080300 Sobic008G144800--Sobic010G140600 Sobic008G144800--Sobic003G125400 Sobic008G146900 Sobic008G146900 Sobic008G144800--Sobic008G146900 Sobic007G227700 Sobic007G227700 Sobic008G144800--Sobic007G227700 Sobic002G193100 Sobic002G193100 Sobic008G144800--Sobic002G193100 Sobic008G144800--Sobic010G080300 Sobic002G001000 Sobic002G001000 Sobic008G144800--Sobic002G001000 Sobic008G144800--Sobic003G343400 Sobic001G029200 Sobic001G029200 Sobic008G144800--Sobic001G029200 Sobic003G253300 Sobic003G253300 Sobic006G110900--Sobic003G253300 Sobic001G286600 Sobic001G286600 Sobic006G110900--Sobic001G286600 Sobic006G155500 Sobic006G155500 Sobic006G110900--Sobic006G155500 Sobic006G214700 Sobic006G214700 Sobic006G110900--Sobic006G214700 Sobic006G110900--Sobic008G063200 Sobic001G118400 Sobic001G118400 Sobic006G110900--Sobic001G118400 Sobic004G224500 Sobic004G224500 Sobic006G110900--Sobic004G224500 Sobic003G328100 Sobic003G328100 Sobic006G110900--Sobic003G328100 Sobic006G050400 Sobic006G050400 Sobic006G110900--Sobic006G050400 Sobic003G085000 Sobic003G085000 Sobic002G424100--Sobic003G085000 Sobic005G002900 Sobic005G002900 Sobic002G424100--Sobic005G002900 Sobic002G056800 Sobic002G056800 Sobic002G424100--Sobic002G056800 Sobic002G131700 Sobic002G131700 Sobic002G424100--Sobic002G131700 Sobic002G424100--Sobic003G310100 Sobic006G111600 Sobic006G111600 Sobic002G424100--Sobic006G111600 Sobic001G531400 Sobic001G531400 Sobic002G424100--Sobic001G531400 Sobic009G028400 Sobic009G028400 Sobic002G424100--Sobic009G028400 Sobic001G291900 Sobic001G291900 Sobic002G424100--Sobic001G291900 Sobic001G450600 Sobic001G450600 Sobic008G063200--Sobic001G450600 Sobic008G063200--Sobic006G110900 Sobic008G063200--Sobic006G214700 Sobic001G006000 Sobic001G006000 Sobic008G063200--Sobic001G006000 Sobic002G102200 Sobic002G102200 Sobic008G063200--Sobic002G102200 Sobic008G063200--Sobic003G253300 Sobic010G076800 Sobic010G076800 Sobic008G063200--Sobic010G076800 Sobic004G333400 Sobic004G333400 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200 Sobic002G246500--Sobic003G343400 Sobic002G246500--Sobic003G125400 Sobic009G068300 Sobic009G068300 Sobic002G246500--Sobic009G068300 Sobic010G189200 Sobic010G189200 Sobic002G246500--Sobic010G189200 Sobic010G255100 Sobic010G255100 Sobic002G246500--Sobic010G255100 Sobic006G186600 Sobic006G186600 Sobic002G246500--Sobic006G186600 Sobic006G256600 Sobic006G256600 Sobic002G246500--Sobic006G256600 Sobic002G246500--Sobic002G102200 Sobic006G210400 Sobic006G210400 Sobic002G246500--Sobic006G210400 Sobic001G424300 Sobic001G424300 Sobic003G310100--Sobic001G424300 Sobic003G310100--Sobic002G056800 Sobic001G196200 Sobic001G196200 Sobic003G310100--Sobic001G196200 Sobic001G489800 Sobic001G489800 Sobic003G310100--Sobic001G489800 Sobic001G437200 Sobic001G437200 Sobic003G310100--Sobic001G437200 Sobic001G281500 Sobic001G281500 Sobic003G310100--Sobic001G281500 Sobic006G237100 Sobic006G237100 Sobic003G310100--Sobic006G237100 Sobic003G310100--Sobic002G424100 Sobic003G310100--Sobic006G111600 Sobic010G269400 Sobic010G269400 Sobic010G140600--Sobic010G269400 Sobic010G058200 Sobic010G058200 Sobic010G140600--Sobic010G058200 Sobic010G140600--Sobic001G286600 Sobic004G281900 Sobic004G281900 Sobic010G140600--Sobic004G281900 Sobic004G238200 Sobic004G238200 Sobic010G140600--Sobic004G238200 Sobic010G140600--Sobic002G102200 Sobic001G072700 Sobic001G072700 Sobic010G140600--Sobic001G072700 Sobic010G140600--Sobic006G155500 Sobic010G140600--Sobic008G144800 Sobic001G327800 Sobic001G327800 Sobic003G343400--Sobic001G327800 Sobic003G343400--Sobic002G246500 Sobic002G231200 Sobic002G231200 Sobic003G343400--Sobic002G231200 Sobic003G343400--Sobic006G210400 Sobic004G054400 Sobic004G054400 Sobic003G343400--Sobic004G054400 Sobic001G512500 Sobic001G512500 Sobic003G343400--Sobic001G512500 Sobic001G032700 Sobic001G032700 Sobic003G343400--Sobic001G032700 Sobic003G343400--Sobic010G140600 Sobic001G065600 Sobic001G065600 Sobic003G343400--Sobic001G065600 Sobic002G281800 Sobic002G281800 Sobic010G080300--Sobic002G281800 Sobic008G193300 Sobic008G193300 Sobic010G080300--Sobic008G193300 Sobic010G080300--Sobic003G125400 Sobic007G046500 Sobic007G046500 Sobic010G080300--Sobic007G046500 Sobic010G080300--Sobic008G063200 Sobic010G080300--Sobic008G144800 Sobic005G072200 Sobic005G072200 Sobic010G080300--Sobic005G072200 Sobic007G029100 Sobic007G029100 Sobic010G080300--Sobic007G029100 Sobic010G080300--Sobic003G310100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.