Gene annotation
Transcriptome id Sobic.008G144800.1
Synonym Sb08g019520, SHM4
Functional annotation - (PubMedID : 26976818)
serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
UniProt C5YQS6
Pfam PF00464
Panther DB PTHR11680 PTHR11680:SF11
NCBI CDD -
KEGG Orthology K00600; glyA, glycine hydroxymethyltransferase
Gene Ontology GO:0016740; transferase activity


Orthologs (automatic annotation)
TAIR AT4G13930 : serine hydroxymethyltransferase 4
RAP-DB (Rice) LOC_Os12g22030.1 : serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a029775 , Zm00025a004399 , Zm00025a050237 , Zm00025a028504
Brachypodium KQJ86864 , KQJ88548
Barley HORVU1Hr1G055860.3 , HORVU1Hr1G055860.2 , HORVU1Hr1G055860.1
Wheat TraesCS2B02G521700 , TraesCS2D02G493600 , TraesCS1B02G232200 , TraesCS1B02G232200 , TraesCS1A02G218700 , TraesCS1A02G218700 , TraesCS2A02G493700 , TraesCS1D02G220400
Populus -


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cDNA sequences
Sobic.008G144800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G140600 bolA, putative, expressed -
2 Sobic.003G125400 Fe-S metabolism associated domain containing protein, expressed -
3 Sobic.008G146900 "similar to Leucine Rich Repeat family protein, expressed"(PubMedID : 29862293)@disease resistance protein, putative, expressed -
4 Sobic.007G227700 expressed protein -
5 Sobic.002G193100 expressed protein -
6 Sobic.010G080300 peptidase, putative, expressed K01436: amidohydrolase
7 Sobic.002G001000 transmembrane amino acid transporter protein, putative, expressed -
8 Sobic.003G343400 sufB/sufD domain containing protein, putative, expressed -
9 Sobic.001G029200 phosphoesterase family protein, putative, expressed K01114: phospholipase C
10 Sobic.002G128900 thioesterase family protein, putative, expressed -
11 Sobic.001G500800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-coumarate--CoA ligase-like 7, putative, expressed K01904: 4-coumarate--CoA ligase
12 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
13 Sobic.006G024500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
14 Sobic.002G349100 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
15 Sobic.002G246500 OTU-like cysteine protease family protein, putative, expressed -
16 Sobic.007G169300 expressed protein -
17 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
18 Sobic.008G063200 expressed protein -
19 Sobic.002G131500 ABC transporter, ATP-binding protein, putative, expressed -
20 Sobic.008G081300 protein kinase, putative, expressed -


Gene co-expression network
sample Sobic008G144800 Sobic008G144800 Sobic010G140600 Sobic010G140600 Sobic008G144800--Sobic010G140600 Sobic003G125400 Sobic003G125400 Sobic008G144800--Sobic003G125400 Sobic008G146900 Sobic008G146900 Sobic008G144800--Sobic008G146900 Sobic007G227700 Sobic007G227700 Sobic008G144800--Sobic007G227700 Sobic002G193100 Sobic002G193100 Sobic008G144800--Sobic002G193100 Sobic010G080300 Sobic010G080300 Sobic008G144800--Sobic010G080300 Sobic002G001000 Sobic002G001000 Sobic008G144800--Sobic002G001000 Sobic003G343400 Sobic003G343400 Sobic008G144800--Sobic003G343400 Sobic001G029200 Sobic001G029200 Sobic008G144800--Sobic001G029200 Sobic010G269400 Sobic010G269400 Sobic010G140600--Sobic010G269400 Sobic010G058200 Sobic010G058200 Sobic010G140600--Sobic010G058200 Sobic001G286600 Sobic001G286600 Sobic010G140600--Sobic001G286600 Sobic004G281900 Sobic004G281900 Sobic010G140600--Sobic004G281900 Sobic004G238200 Sobic004G238200 Sobic010G140600--Sobic004G238200 Sobic002G102200 Sobic002G102200 Sobic010G140600--Sobic002G102200 Sobic001G072700 Sobic001G072700 Sobic010G140600--Sobic001G072700 Sobic006G155500 Sobic006G155500 Sobic010G140600--Sobic006G155500 Sobic010G140600--Sobic008G144800 Sobic003G125400--Sobic008G144800 Sobic006G110900 Sobic006G110900 Sobic003G125400--Sobic006G110900 Sobic002G424100 Sobic002G424100 Sobic003G125400--Sobic002G424100 Sobic008G063200 Sobic008G063200 Sobic003G125400--Sobic008G063200 Sobic002G246500 Sobic002G246500 Sobic003G125400--Sobic002G246500 Sobic003G310100 Sobic003G310100 Sobic003G125400--Sobic003G310100 Sobic003G125400--Sobic010G140600 Sobic003G125400--Sobic003G343400 Sobic003G125400--Sobic010G080300 Sobic010G184600 Sobic010G184600 Sobic008G146900--Sobic010G184600 Sobic002G276100 Sobic002G276100 Sobic008G146900--Sobic002G276100 Sobic001G159400 Sobic001G159400 Sobic008G146900--Sobic001G159400 Sobic010G196500 Sobic010G196500 Sobic008G146900--Sobic010G196500 Sobic004G181700 Sobic004G181700 Sobic008G146900--Sobic004G181700 Sobic008G146900--Sobic008G144800 Sobic004G189900 Sobic004G189900 Sobic008G146900--Sobic004G189900 Sobic008G146900--Sobic002G193100 Sobic003G014300 Sobic003G014300 Sobic008G146900--Sobic003G014300 Sobic007G169300 Sobic007G169300 Sobic007G227700--Sobic007G169300 Sobic007G227700--Sobic001G072700 Sobic004G026500 Sobic004G026500 Sobic007G227700--Sobic004G026500 Sobic007G227700--Sobic002G193100 Sobic007G227700--Sobic010G140600 Sobic007G227700--Sobic001G029200 Sobic007G227700--Sobic002G001000 Sobic008G081900 Sobic008G081900 Sobic007G227700--Sobic008G081900 Sobic002G349100 Sobic002G349100 Sobic007G227700--Sobic002G349100 Sobic002G193100--Sobic004G026500 Sobic002G193100--Sobic010G196500 Sobic002G193100--Sobic007G227700 Sobic002G193100--Sobic007G169300 Sobic002G193100--Sobic002G276100 Sobic006G065600 Sobic006G065600 Sobic002G193100--Sobic006G065600 Sobic003G343500 Sobic003G343500 Sobic002G193100--Sobic003G343500 Sobic001G219700 Sobic001G219700 Sobic002G193100--Sobic001G219700 Sobic002G345700 Sobic002G345700 Sobic002G193100--Sobic002G345700 Sobic002G281800 Sobic002G281800 Sobic010G080300--Sobic002G281800 Sobic008G193300 Sobic008G193300 Sobic010G080300--Sobic008G193300 Sobic010G080300--Sobic003G125400 Sobic007G046500 Sobic007G046500 Sobic010G080300--Sobic007G046500 Sobic010G080300--Sobic008G063200 Sobic010G080300--Sobic008G144800 Sobic005G072200 Sobic005G072200 Sobic010G080300--Sobic005G072200 Sobic007G029100 Sobic007G029100 Sobic010G080300--Sobic007G029100 Sobic010G080300--Sobic003G310100 Sobic002G001000--Sobic007G227700 Sobic002G200700 Sobic002G200700 Sobic002G001000--Sobic002G200700 Sobic004G207400 Sobic004G207400 Sobic002G001000--Sobic004G207400 Sobic002G001000--Sobic010G140600 Sobic002G001000--Sobic001G072700 Sobic010G013200 Sobic010G013200 Sobic002G001000--Sobic010G013200 Sobic008G089900 Sobic008G089900 Sobic002G001000--Sobic008G089900 Sobic003G403500 Sobic003G403500 Sobic002G001000--Sobic003G403500 Sobic003G224100 Sobic003G224100 Sobic002G001000--Sobic003G224100 Sobic001G327800 Sobic001G327800 Sobic003G343400--Sobic001G327800 Sobic003G343400--Sobic002G246500 Sobic002G231200 Sobic002G231200 Sobic003G343400--Sobic002G231200 Sobic006G210400 Sobic006G210400 Sobic003G343400--Sobic006G210400 Sobic004G054400 Sobic004G054400 Sobic003G343400--Sobic004G054400 Sobic001G512500 Sobic001G512500 Sobic003G343400--Sobic001G512500 Sobic001G032700 Sobic001G032700 Sobic003G343400--Sobic001G032700 Sobic003G343400--Sobic010G140600 Sobic001G065600 Sobic001G065600 Sobic003G343400--Sobic001G065600 Sobic010G035500 Sobic010G035500 Sobic001G029200--Sobic010G035500 Sobic004G300000 Sobic004G300000 Sobic001G029200--Sobic004G300000 Sobic009G019100 Sobic009G019100 Sobic001G029200--Sobic009G019100 Sobic001G029200--Sobic008G081900 Sobic009G213800 Sobic009G213800 Sobic001G029200--Sobic009G213800 Sobic001G029200--Sobic007G227700 Sobic001G029200--Sobic002G193100 Sobic001G029200--Sobic004G026500 Sobic002G339300 Sobic002G339300 Sobic001G029200--Sobic002G339300
Octagon: transcription factors


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