Gene annotation
Transcriptome id Sobic.002G246500.1
Synonym
Functional annotation OTU-like cysteine protease family protein, putative, expressed
UniProt A0A1B6QDB9
Pfam PF02338
Panther DB PTHR12419 PTHR12419:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57810 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os09g31280.2 : OTU-like cysteine protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a014201
Brachypodium KQJ98906 , KQJ98907 , KQJ98905 , KQJ98908
Barley HORVU5Hr1G107000.9 , HORVU5Hr1G107000.4 , HORVU5Hr1G107000.6 , HORVU5Hr1G107000.1 , HORVU5Hr1G107000.3 , HORVU5Hr1G107000.2 , HORVU5Hr1G107000.20 , HORVU5Hr1G107000.19 , HORVU5Hr1G107000.18 , HORVU5Hr1G107000.10 , HORVU5Hr1G107000.13 , HORVU5Hr1G107000.12 , HORVU5Hr1G107000.15 , HORVU5Hr1G107000.14 , HORVU5Hr1G107000.16
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G343400 sufB/sufD domain containing protein, putative, expressed -
2 Sobic.003G125400 Fe-S metabolism associated domain containing protein, expressed -
3 Sobic.009G068300 chloroplast lumen common family protein, putative, expressed -
4 Sobic.010G189200 pentatricopeptide, putative, expressed -
5 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
6 Sobic.006G186600 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
7 Sobic.006G256600 expressed protein -
8 Sobic.002G102200 acetyltransferase, GNAT family, putative, expressed -
9 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
10 Sobic.010G058200 sulfiredoxin-1, putative, expressed K12260: sulfiredoxin
11 Sobic.004G333400 COBW domain containing protein, putative, expressed -
12 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
13 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
14 Sobic.008G063200 expressed protein -
15 Sobic.010G140600 bolA, putative, expressed -
16 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
17 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
18 Sobic.008G144800 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
19 Sobic.007G189200 "Candidate orthologue to the wheat Pm40 gene, Disease resistance RGA1"(PubMedID : 27755575)@CC-NBS-LRR, putative, expressed -
20 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase


Gene co-expression network
sample Sobic002G246500 Sobic002G246500 Sobic003G343400 Sobic003G343400 Sobic002G246500--Sobic003G343400 Sobic003G125400 Sobic003G125400 Sobic002G246500--Sobic003G125400 Sobic009G068300 Sobic009G068300 Sobic002G246500--Sobic009G068300 Sobic010G189200 Sobic010G189200 Sobic002G246500--Sobic010G189200 Sobic010G255100 Sobic010G255100 Sobic002G246500--Sobic010G255100 Sobic006G186600 Sobic006G186600 Sobic002G246500--Sobic006G186600 Sobic006G256600 Sobic006G256600 Sobic002G246500--Sobic006G256600 Sobic002G102200 Sobic002G102200 Sobic002G246500--Sobic002G102200 Sobic006G210400 Sobic006G210400 Sobic002G246500--Sobic006G210400 Sobic001G327800 Sobic001G327800 Sobic003G343400--Sobic001G327800 Sobic003G343400--Sobic002G246500 Sobic002G231200 Sobic002G231200 Sobic003G343400--Sobic002G231200 Sobic003G343400--Sobic006G210400 Sobic004G054400 Sobic004G054400 Sobic003G343400--Sobic004G054400 Sobic001G512500 Sobic001G512500 Sobic003G343400--Sobic001G512500 Sobic001G032700 Sobic001G032700 Sobic003G343400--Sobic001G032700 Sobic010G140600 Sobic010G140600 Sobic003G343400--Sobic010G140600 Sobic001G065600 Sobic001G065600 Sobic003G343400--Sobic001G065600 Sobic008G144800 Sobic008G144800 Sobic003G125400--Sobic008G144800 Sobic006G110900 Sobic006G110900 Sobic003G125400--Sobic006G110900 Sobic002G424100 Sobic002G424100 Sobic003G125400--Sobic002G424100 Sobic008G063200 Sobic008G063200 Sobic003G125400--Sobic008G063200 Sobic003G125400--Sobic002G246500 Sobic003G310100 Sobic003G310100 Sobic003G125400--Sobic003G310100 Sobic003G125400--Sobic010G140600 Sobic003G125400--Sobic003G343400 Sobic010G080300 Sobic010G080300 Sobic003G125400--Sobic010G080300 Sobic005G002900 Sobic005G002900 Sobic009G068300--Sobic005G002900 Sobic009G068300--Sobic008G063200 Sobic003G085000 Sobic003G085000 Sobic009G068300--Sobic003G085000 Sobic009G068300--Sobic010G255100 Sobic001G291900 Sobic001G291900 Sobic009G068300--Sobic001G291900 Sobic004G333400 Sobic004G333400 Sobic009G068300--Sobic004G333400 Sobic009G068300--Sobic002G102200 Sobic009G068300--Sobic006G210400 Sobic004G336000 Sobic004G336000 Sobic009G068300--Sobic004G336000 Sobic001G450600 Sobic001G450600 Sobic010G189200--Sobic001G450600 Sobic010G189200--Sobic008G063200 Sobic004G298900 Sobic004G298900 Sobic010G189200--Sobic004G298900 Sobic006G258700 Sobic006G258700 Sobic010G189200--Sobic006G258700 Sobic006G214700 Sobic006G214700 Sobic010G189200--Sobic006G214700 Sobic004G183800 Sobic004G183800 Sobic010G189200--Sobic004G183800 Sobic003G014300 Sobic003G014300 Sobic010G189200--Sobic003G014300 Sobic010G189200--Sobic004G333400 Sobic010G189200--Sobic002G102200 Sobic010G255100--Sobic006G256600 Sobic010G255100--Sobic003G085000 Sobic001G382800 Sobic001G382800 Sobic010G255100--Sobic001G382800 Sobic006G055800 Sobic006G055800 Sobic010G255100--Sobic006G055800 Sobic005G014700 Sobic005G014700 Sobic010G255100--Sobic005G014700 Sobic003G128400 Sobic003G128400 Sobic010G255100--Sobic003G128400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic001G102500 Sobic001G102500 Sobic010G255100--Sobic001G102500 Sobic006G186600--Sobic001G102500 Sobic002G431300 Sobic002G431300 Sobic006G186600--Sobic002G431300 Sobic006G186600--Sobic004G333400 Sobic008G089500 Sobic008G089500 Sobic006G186600--Sobic008G089500 Sobic009G193500 Sobic009G193500 Sobic006G186600--Sobic009G193500 Sobic006G094300 Sobic006G094300 Sobic006G186600--Sobic006G094300 Sobic008G130900 Sobic008G130900 Sobic006G186600--Sobic008G130900 Sobic010G109600 Sobic010G109600 Sobic006G186600--Sobic010G109600 Sobic006G186600--Sobic005G002900 Sobic006G256600--Sobic010G255100 Sobic006G256600--Sobic003G085000 Sobic006G256600--Sobic001G291900 Sobic006G256600--Sobic006G210400 Sobic002G297400 Sobic002G297400 Sobic006G256600--Sobic002G297400 Sobic006G256600--Sobic006G055800 Sobic006G256600--Sobic005G002900 Sobic001G309300 Sobic001G309300 Sobic006G256600--Sobic001G309300 Sobic004G065300 Sobic004G065300 Sobic006G256600--Sobic004G065300 Sobic006G101500 Sobic006G101500 Sobic002G102200--Sobic006G101500 Sobic001G391900 Sobic001G391900 Sobic002G102200--Sobic001G391900 Sobic003G387100 Sobic003G387100 Sobic002G102200--Sobic003G387100 Sobic001G124800 Sobic001G124800 Sobic002G102200--Sobic001G124800 Sobic010G058200 Sobic010G058200 Sobic002G102200--Sobic010G058200 Sobic006G050400 Sobic006G050400 Sobic002G102200--Sobic006G050400 Sobic008G006100 Sobic008G006100 Sobic002G102200--Sobic008G006100 Sobic002G102200--Sobic008G063200 Sobic009G059300 Sobic009G059300 Sobic002G102200--Sobic009G059300 Sobic006G010900 Sobic006G010900 Sobic006G210400--Sobic006G010900 Sobic007G085800 Sobic007G085800 Sobic006G210400--Sobic007G085800 Sobic006G210400--Sobic006G256600 Sobic003G141100 Sobic003G141100 Sobic006G210400--Sobic003G141100 Sobic006G210400--Sobic002G297400 Sobic006G210400--Sobic003G387100 Sobic006G210400--Sobic001G309300 Sobic006G210400--Sobic010G255100 Sobic006G210400--Sobic001G124800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.