Gene annotation
Transcriptome id Sobic.009G068300.1,Sobic.009G068300.3,Sobic.009G068300.2
Synonym Sb09g005640
Functional annotation chloroplast lumen common family protein, putative, expressed
UniProt A0A1Z5R1A3 , C5YU77
Pfam -
Panther DB PTHR26312 PTHR26312:SF67
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G39470 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g08930.1 : chloroplast lumen common family protein, putative, expressed
MaizeGDB (Corn) Zm00025a043024
Brachypodium KQK07183
Barley -
Wheat TraesCS1B02G140100 , TraesCS1A02G120800 , TraesCS1D02G121600
Populus -


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cDNA sequences
Sobic.009G068300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
2 Sobic.008G063200 expressed protein -
3 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
4 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
5 Sobic.001G291900 expressed protein -
6 Sobic.004G333400 COBW domain containing protein, putative, expressed -
7 Sobic.002G102200 acetyltransferase, GNAT family, putative, expressed -
8 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
9 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
10 Sobic.003G162900 expressed protein -
11 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
12 Sobic.006G256600 expressed protein -
13 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
14 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
15 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
16 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
17 Sobic.004G065300 CR084 protein, putative, expressed -
18 Sobic.006G186600 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
19 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
20 Sobic.010G140600 bolA, putative, expressed -


Gene co-expression network
sample Sobic009G068300 Sobic009G068300 Sobic005G002900 Sobic005G002900 Sobic009G068300--Sobic005G002900 Sobic008G063200 Sobic008G063200 Sobic009G068300--Sobic008G063200 Sobic003G085000 Sobic003G085000 Sobic009G068300--Sobic003G085000 Sobic010G255100 Sobic010G255100 Sobic009G068300--Sobic010G255100 Sobic001G291900 Sobic001G291900 Sobic009G068300--Sobic001G291900 Sobic004G333400 Sobic004G333400 Sobic009G068300--Sobic004G333400 Sobic002G102200 Sobic002G102200 Sobic009G068300--Sobic002G102200 Sobic006G210400 Sobic006G210400 Sobic009G068300--Sobic006G210400 Sobic004G336000 Sobic004G336000 Sobic009G068300--Sobic004G336000 Sobic001G083100 Sobic001G083100 Sobic005G002900--Sobic001G083100 Sobic006G055800 Sobic006G055800 Sobic005G002900--Sobic006G055800 Sobic009G148500 Sobic009G148500 Sobic005G002900--Sobic009G148500 Sobic001G469933 Sobic001G469933 Sobic005G002900--Sobic001G469933 Sobic005G002900--Sobic001G291900 Sobic006G106400 Sobic006G106400 Sobic005G002900--Sobic006G106400 Sobic003G432500 Sobic003G432500 Sobic005G002900--Sobic003G432500 Sobic003G232700 Sobic003G232700 Sobic005G002900--Sobic003G232700 Sobic002G131700 Sobic002G131700 Sobic005G002900--Sobic002G131700 Sobic001G450600 Sobic001G450600 Sobic008G063200--Sobic001G450600 Sobic006G110900 Sobic006G110900 Sobic008G063200--Sobic006G110900 Sobic006G214700 Sobic006G214700 Sobic008G063200--Sobic006G214700 Sobic001G006000 Sobic001G006000 Sobic008G063200--Sobic001G006000 Sobic008G063200--Sobic002G102200 Sobic003G253300 Sobic003G253300 Sobic008G063200--Sobic003G253300 Sobic010G076800 Sobic010G076800 Sobic008G063200--Sobic010G076800 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200 Sobic006G256600 Sobic006G256600 Sobic003G085000--Sobic006G256600 Sobic003G085000--Sobic001G291900 Sobic003G085000--Sobic006G055800 Sobic003G085000--Sobic010G255100 Sobic003G085000--Sobic004G336000 Sobic001G531400 Sobic001G531400 Sobic003G085000--Sobic001G531400 Sobic003G085000--Sobic005G002900 Sobic001G104800 Sobic001G104800 Sobic003G085000--Sobic001G104800 Sobic004G065300 Sobic004G065300 Sobic003G085000--Sobic004G065300 Sobic010G255100--Sobic006G256600 Sobic010G255100--Sobic003G085000 Sobic001G382800 Sobic001G382800 Sobic010G255100--Sobic001G382800 Sobic010G255100--Sobic006G055800 Sobic005G014700 Sobic005G014700 Sobic010G255100--Sobic005G014700 Sobic003G128400 Sobic003G128400 Sobic010G255100--Sobic003G128400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic001G102500 Sobic001G102500 Sobic010G255100--Sobic001G102500 Sobic001G368500 Sobic001G368500 Sobic001G291900--Sobic001G368500 Sobic001G291900--Sobic001G104800 Sobic001G291900--Sobic003G085000 Sobic001G291900--Sobic004G336000 Sobic001G291900--Sobic005G002900 Sobic009G059300 Sobic009G059300 Sobic001G291900--Sobic009G059300 Sobic001G309300 Sobic001G309300 Sobic001G291900--Sobic001G309300 Sobic001G291900--Sobic006G055800 Sobic001G291900--Sobic006G106400 Sobic003G334100 Sobic003G334100 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic010G183400 Sobic010G183400 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic002G181000 Sobic002G181000 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic006G101500 Sobic006G101500 Sobic002G102200--Sobic006G101500 Sobic001G391900 Sobic001G391900 Sobic002G102200--Sobic001G391900 Sobic003G387100 Sobic003G387100 Sobic002G102200--Sobic003G387100 Sobic001G124800 Sobic001G124800 Sobic002G102200--Sobic001G124800 Sobic010G058200 Sobic010G058200 Sobic002G102200--Sobic010G058200 Sobic006G050400 Sobic006G050400 Sobic002G102200--Sobic006G050400 Sobic008G006100 Sobic008G006100 Sobic002G102200--Sobic008G006100 Sobic002G102200--Sobic008G063200 Sobic002G102200--Sobic009G059300 Sobic006G010900 Sobic006G010900 Sobic006G210400--Sobic006G010900 Sobic007G085800 Sobic007G085800 Sobic006G210400--Sobic007G085800 Sobic006G210400--Sobic006G256600 Sobic003G141100 Sobic003G141100 Sobic006G210400--Sobic003G141100 Sobic002G297400 Sobic002G297400 Sobic006G210400--Sobic002G297400 Sobic006G210400--Sobic003G387100 Sobic006G210400--Sobic001G309300 Sobic006G210400--Sobic010G255100 Sobic006G210400--Sobic001G124800 Sobic004G336000--Sobic001G309300 Sobic001G495200 Sobic001G495200 Sobic004G336000--Sobic001G495200 Sobic008G073100 Sobic008G073100 Sobic004G336000--Sobic008G073100 Sobic004G336000--Sobic001G291900 Sobic004G336000--Sobic003G432500 Sobic004G336000--Sobic006G055800 Sobic004G011300 Sobic004G011300 Sobic004G336000--Sobic004G011300 Sobic004G336000--Sobic003G085000 Sobic004G336000--Sobic003G387100
Octagon: transcription factors


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