Gene annotation
Transcriptome id Sobic.010G189200.1
Synonym Sb10g023920
Functional annotation pentatricopeptide, putative, expressed
UniProt C5Z5R9
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF328
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03540 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os06g40860.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a034203 , Zm00025a018145
Brachypodium KQK17690
Barley HORVU7Hr1G094850.17 , HORVU7Hr1G094850.16 , HORVU7Hr1G094850.15 , HORVU7Hr1G094850.14 , HORVU7Hr1G094850.11 , HORVU7Hr1G094850.10 , HORVU7Hr1G094850.20 , HORVU7Hr1G094850.21 , HORVU7Hr1G094850.9 , HORVU7Hr1G094850.8 , HORVU7Hr1G094850.7 , HORVU7Hr1G094850.6 , HORVU7Hr1G094850.5 , HORVU7Hr1G094850.4 , HORVU7Hr1G094850.3 , HORVU7Hr1G094850.2 , HORVU7Hr1G094850.1 , HORVU7Hr1G094850.13 , HORVU7Hr1G094850.12 , HORVU7Hr1G094850.19 , HORVU7Hr1G094850.18
Wheat TraesCS7D02G399200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
2 Sobic.008G063200 expressed protein -
3 Sobic.004G298900 OR, putative, expressed -
4 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
5 Sobic.006G214700 APO, putative, expressed -
6 Sobic.004G183800 AAA family ATPase, putative, expressed K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
7 Sobic.003G014300 expressed protein -
8 Sobic.004G333400 COBW domain containing protein, putative, expressed -
9 Sobic.002G102200 acetyltransferase, GNAT family, putative, expressed -
10 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
11 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
12 Sobic.005G175500 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -
13 Sobic.004G248400 APO, putative, expressed -
14 Sobic.009G141400 transcriptional regulator, putative, expressed -
15 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
16 Sobic.006G186600 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
17 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
18 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
19 Sobic.010G109600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@angel, putative, expressed -
20 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -


Gene co-expression network
sample Sobic010G189200 Sobic010G189200 Sobic001G450600 Sobic001G450600 Sobic010G189200--Sobic001G450600 Sobic008G063200 Sobic008G063200 Sobic010G189200--Sobic008G063200 Sobic004G298900 Sobic004G298900 Sobic010G189200--Sobic004G298900 Sobic006G258700 Sobic006G258700 Sobic010G189200--Sobic006G258700 Sobic006G214700 Sobic006G214700 Sobic010G189200--Sobic006G214700 Sobic004G183800 Sobic004G183800 Sobic010G189200--Sobic004G183800 Sobic003G014300 Sobic003G014300 Sobic010G189200--Sobic003G014300 Sobic004G333400 Sobic004G333400 Sobic010G189200--Sobic004G333400 Sobic002G102200 Sobic002G102200 Sobic010G189200--Sobic002G102200 Sobic001G450600--Sobic006G214700 Sobic001G450600--Sobic004G333400 Sobic001G450600--Sobic008G063200 Sobic010G183400 Sobic010G183400 Sobic001G450600--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic001G450600--Sobic003G084500 Sobic002G331800 Sobic002G331800 Sobic001G450600--Sobic002G331800 Sobic003G286300 Sobic003G286300 Sobic001G450600--Sobic003G286300 Sobic003G334100 Sobic003G334100 Sobic001G450600--Sobic003G334100 Sobic001G450600--Sobic010G189200 Sobic008G063200--Sobic001G450600 Sobic006G110900 Sobic006G110900 Sobic008G063200--Sobic006G110900 Sobic008G063200--Sobic006G214700 Sobic001G006000 Sobic001G006000 Sobic008G063200--Sobic001G006000 Sobic008G063200--Sobic002G102200 Sobic003G253300 Sobic003G253300 Sobic008G063200--Sobic003G253300 Sobic010G076800 Sobic010G076800 Sobic008G063200--Sobic010G076800 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200 Sobic003G037300 Sobic003G037300 Sobic004G298900--Sobic003G037300 Sobic009G062400 Sobic009G062400 Sobic004G298900--Sobic009G062400 Sobic004G298900--Sobic006G258700 Sobic008G006100 Sobic008G006100 Sobic004G298900--Sobic008G006100 Sobic004G298900--Sobic003G014300 Sobic004G298900--Sobic002G102200 Sobic005G111550 Sobic005G111550 Sobic004G298900--Sobic005G111550 Sobic004G151500 Sobic004G151500 Sobic004G298900--Sobic004G151500 Sobic006G260800 Sobic006G260800 Sobic004G298900--Sobic006G260800 Sobic006G258700--Sobic003G014300 Sobic010G269400 Sobic010G269400 Sobic006G258700--Sobic010G269400 Sobic006G258700--Sobic004G298900 Sobic001G351400 Sobic001G351400 Sobic006G258700--Sobic001G351400 Sobic006G258700--Sobic003G037300 Sobic006G258700--Sobic010G189200 Sobic004G300000 Sobic004G300000 Sobic006G258700--Sobic004G300000 Sobic001G286600 Sobic001G286600 Sobic006G258700--Sobic001G286600 Sobic001G404500 Sobic001G404500 Sobic006G258700--Sobic001G404500 Sobic003G179400 Sobic003G179400 Sobic006G214700--Sobic003G179400 Sobic006G214700--Sobic001G450600 Sobic006G214700--Sobic002G331800 Sobic005G028900 Sobic005G028900 Sobic006G214700--Sobic005G028900 Sobic006G214700--Sobic006G110900 Sobic006G214700--Sobic004G333400 Sobic006G214700--Sobic003G253300 Sobic006G214700--Sobic008G063200 Sobic006G214700--Sobic010G076800 Sobic004G183800--Sobic010G189200 Sobic004G210900 Sobic004G210900 Sobic004G183800--Sobic004G210900 Sobic005G175500 Sobic005G175500 Sobic004G183800--Sobic005G175500 Sobic010G109600 Sobic010G109600 Sobic004G183800--Sobic010G109600 Sobic001G043800 Sobic001G043800 Sobic004G183800--Sobic001G043800 Sobic001G300100 Sobic001G300100 Sobic004G183800--Sobic001G300100 Sobic009G193500 Sobic009G193500 Sobic004G183800--Sobic009G193500 Sobic004G183800--Sobic008G063200 Sobic002G276100 Sobic002G276100 Sobic004G183800--Sobic002G276100 Sobic003G014300--Sobic006G258700 Sobic003G014300--Sobic004G298900 Sobic003G014300--Sobic010G269400 Sobic003G014300--Sobic004G300000 Sobic003G014300--Sobic003G037300 Sobic001G512500 Sobic001G512500 Sobic003G014300--Sobic001G512500 Sobic003G014300--Sobic005G175500 Sobic010G035500 Sobic010G035500 Sobic003G014300--Sobic010G035500 Sobic003G014300--Sobic004G151500 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic002G181000 Sobic002G181000 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic006G101500 Sobic006G101500 Sobic002G102200--Sobic006G101500 Sobic001G391900 Sobic001G391900 Sobic002G102200--Sobic001G391900 Sobic003G387100 Sobic003G387100 Sobic002G102200--Sobic003G387100 Sobic001G124800 Sobic001G124800 Sobic002G102200--Sobic001G124800 Sobic010G058200 Sobic010G058200 Sobic002G102200--Sobic010G058200 Sobic006G050400 Sobic006G050400 Sobic002G102200--Sobic006G050400 Sobic002G102200--Sobic008G006100 Sobic002G102200--Sobic008G063200 Sobic009G059300 Sobic009G059300 Sobic002G102200--Sobic009G059300
Octagon: transcription factors


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