Gene annotation
Transcriptome id Sobic.004G183800.1,Sobic.004G183800.2
Synonym Sb04g023280
Functional annotation AAA family ATPase, putative, expressed
UniProt A0A194YQF1 , A0A1Z5RN55
Pfam PF00004 PF10431
Panther DB PTHR11262 PTHR11262:SF4
NCBI CDD -
KEGG Orthology K03544; clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
Gene Ontology GO:0005524; ATP binding GO:0006457protein folding


Orthologs (automatic annotation)
TAIR AT1G33360 : ATP-dependent Clp protease
RAP-DB (Rice) LOC_Os02g35630.1 : AAA family ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a020732 , Zm00025a031652
Brachypodium KQJ99946
Barley HORVU6Hr1G044030.9 , HORVU6Hr1G044030.8 , HORVU6Hr1G044030.1 , HORVU6Hr1G044030.3 , HORVU6Hr1G044030.2 , HORVU6Hr1G044030.5 , HORVU6Hr1G044030.4 , HORVU6Hr1G044030.7 , HORVU6Hr1G044030.6 , HORVU6Hr1G044030.12 , HORVU6Hr1G044030.11 , HORVU6Hr1G044030.10 , HORVU6Hr1G044030.13
Wheat TraesCS6B02G231000 , TraesCS6B02G231000 , TraesCS6D02G182300 , TraesCS6D02G182300 , TraesCS6A02G197300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G189200 pentatricopeptide, putative, expressed -
2 Sobic.004G210900 auxin efflux carrier component, putative, expressed -
3 Sobic.005G175500 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -
4 Sobic.010G109600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@angel, putative, expressed -
5 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
6 Sobic.001G300100 - -
7 Sobic.009G193500 AGAP007115-PA, putative, expressed -
8 Sobic.008G063200 expressed protein -
9 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
10 Sobic.006G186600 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
11 Sobic.002G115100 - -
12 Sobic.007G189200 "Candidate orthologue to the wheat Pm40 gene, Disease resistance RGA1"(PubMedID : 27755575)@CC-NBS-LRR, putative, expressed -
13 Sobic.004G189900 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed K13418: somatic embryogenesis receptor kinase 1
14 Sobic.002G339300 myosin-Vb, putative, expressed K10357: myosin V
15 Sobic.001G145000 expressed protein K14376: poly(A) polymerase
16 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
17 Sobic.009G002300 expressed protein -
18 Sobic.006G031800 - -
19 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
20 Sobic.007G029100 ATPase BadF/BadG/BcrA/BcrD type, putative, expressed -


Gene co-expression network
sample Sobic004G183800 Sobic004G183800 Sobic010G189200 Sobic010G189200 Sobic004G183800--Sobic010G189200 Sobic004G210900 Sobic004G210900 Sobic004G183800--Sobic004G210900 Sobic005G175500 Sobic005G175500 Sobic004G183800--Sobic005G175500 Sobic010G109600 Sobic010G109600 Sobic004G183800--Sobic010G109600 Sobic001G043800 Sobic001G043800 Sobic004G183800--Sobic001G043800 Sobic001G300100 Sobic001G300100 Sobic004G183800--Sobic001G300100 Sobic009G193500 Sobic009G193500 Sobic004G183800--Sobic009G193500 Sobic008G063200 Sobic008G063200 Sobic004G183800--Sobic008G063200 Sobic002G276100 Sobic002G276100 Sobic004G183800--Sobic002G276100 Sobic001G450600 Sobic001G450600 Sobic010G189200--Sobic001G450600 Sobic010G189200--Sobic008G063200 Sobic004G298900 Sobic004G298900 Sobic010G189200--Sobic004G298900 Sobic006G258700 Sobic006G258700 Sobic010G189200--Sobic006G258700 Sobic006G214700 Sobic006G214700 Sobic010G189200--Sobic006G214700 Sobic010G189200--Sobic004G183800 Sobic003G014300 Sobic003G014300 Sobic010G189200--Sobic003G014300 Sobic004G333400 Sobic004G333400 Sobic010G189200--Sobic004G333400 Sobic002G102200 Sobic002G102200 Sobic010G189200--Sobic002G102200 Sobic004G210900--Sobic004G183800 Sobic004G210900--Sobic005G175500 Sobic010G000600 Sobic010G000600 Sobic004G210900--Sobic010G000600 Sobic006G060601 Sobic006G060601 Sobic004G210900--Sobic006G060601 Sobic010G030300 Sobic010G030300 Sobic004G210900--Sobic010G030300 Sobic008G146900 Sobic008G146900 Sobic004G210900--Sobic008G146900 Sobic009G213800 Sobic009G213800 Sobic004G210900--Sobic009G213800 Sobic004G181700 Sobic004G181700 Sobic004G210900--Sobic004G181700 Sobic004G210900--Sobic003G014300 Sobic005G175500--Sobic003G014300 Sobic005G175500--Sobic006G258700 Sobic005G175600 Sobic005G175600 Sobic005G175500--Sobic005G175600 Sobic004G300000 Sobic004G300000 Sobic005G175500--Sobic004G300000 Sobic005G175500--Sobic006G060601 Sobic001G224900 Sobic001G224900 Sobic005G175500--Sobic001G224900 Sobic001G404500 Sobic001G404500 Sobic005G175500--Sobic001G404500 Sobic009G019100 Sobic009G019100 Sobic005G175500--Sobic009G019100 Sobic010G207500 Sobic010G207500 Sobic005G175500--Sobic010G207500 Sobic010G197000 Sobic010G197000 Sobic010G109600--Sobic010G197000 Sobic010G109600--Sobic004G333400 Sobic003G084500 Sobic003G084500 Sobic010G109600--Sobic003G084500 Sobic003G141100 Sobic003G141100 Sobic010G109600--Sobic003G141100 Sobic010G109600--Sobic001G450600 Sobic009G014100 Sobic009G014100 Sobic010G109600--Sobic009G014100 Sobic001G102500 Sobic001G102500 Sobic010G109600--Sobic001G102500 Sobic001G283700 Sobic001G283700 Sobic010G109600--Sobic001G283700 Sobic008G172300 Sobic008G172300 Sobic010G109600--Sobic008G172300 Sobic007G136800 Sobic007G136800 Sobic001G043800--Sobic007G136800 Sobic006G130800 Sobic006G130800 Sobic001G043800--Sobic006G130800 Sobic004G086700 Sobic004G086700 Sobic001G043800--Sobic004G086700 Sobic002G218500 Sobic002G218500 Sobic001G043800--Sobic002G218500 Sobic001G043800--Sobic001G102500 Sobic006G031800 Sobic006G031800 Sobic001G043800--Sobic006G031800 Sobic007G029700 Sobic007G029700 Sobic001G043800--Sobic007G029700 Sobic001G053000 Sobic001G053000 Sobic001G043800--Sobic001G053000 Sobic002G431300 Sobic002G431300 Sobic001G043800--Sobic002G431300 Sobic001G300100--Sobic008G172300 Sobic007G110700 Sobic007G110700 Sobic001G300100--Sobic007G110700 Sobic010G100800 Sobic010G100800 Sobic001G300100--Sobic010G100800 Sobic002G339300 Sobic002G339300 Sobic001G300100--Sobic002G339300 Sobic002G404200 Sobic002G404200 Sobic001G300100--Sobic002G404200 Sobic001G300100--Sobic009G193500 Sobic010G086900 Sobic010G086900 Sobic001G300100--Sobic010G086900 Sobic001G261900 Sobic001G261900 Sobic001G300100--Sobic001G261900 Sobic004G262700 Sobic004G262700 Sobic001G300100--Sobic004G262700 Sobic004G026500 Sobic004G026500 Sobic009G193500--Sobic004G026500 Sobic009G193500--Sobic002G339300 Sobic009G193500--Sobic002G276100 Sobic001G124100 Sobic001G124100 Sobic009G193500--Sobic001G124100 Sobic007G103100 Sobic007G103100 Sobic009G193500--Sobic007G103100 Sobic002G168500 Sobic002G168500 Sobic009G193500--Sobic002G168500 Sobic009G193500--Sobic008G172300 Sobic001G219700 Sobic001G219700 Sobic009G193500--Sobic001G219700 Sobic006G186600 Sobic006G186600 Sobic009G193500--Sobic006G186600 Sobic008G063200--Sobic001G450600 Sobic006G110900 Sobic006G110900 Sobic008G063200--Sobic006G110900 Sobic008G063200--Sobic006G214700 Sobic001G006000 Sobic001G006000 Sobic008G063200--Sobic001G006000 Sobic008G063200--Sobic002G102200 Sobic003G253300 Sobic003G253300 Sobic008G063200--Sobic003G253300 Sobic010G076800 Sobic010G076800 Sobic008G063200--Sobic010G076800 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200 Sobic003G381200 Sobic003G381200 Sobic002G276100--Sobic003G381200 Sobic002G276100--Sobic004G026500 Sobic002G276100--Sobic004G181700 Sobic001G159400 Sobic001G159400 Sobic002G276100--Sobic001G159400 Sobic010G138000 Sobic010G138000 Sobic002G276100--Sobic010G138000 Sobic002G276100--Sobic002G168500 Sobic002G276100--Sobic009G193500 Sobic002G276100--Sobic008G172300 Sobic001G268200 Sobic001G268200 Sobic002G276100--Sobic001G268200
Octagon: transcription factors


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