Gene annotation
Transcriptome id Sobic.002G040800.1
Synonym CPK2, ATCPK2, Sb02g003500
Functional annotation CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C5XA82
Pfam PF13499 PF07714
Panther DB PTHR24349 PTHR24349:SF81
NCBI CDD KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
KEGG Orthology K13412; calcium-dependent protein kinase
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G04870 : calcium dependent protein kinase 1
RAP-DB (Rice) LOC_Os07g06740.2 : CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a016143 , Zm00025a032358 , Zm00025a024833 , Zm00025a008491 , Zm00025a016612 , Zm00025a032700 , Zm00025a008488 , Zm00025a056693 , Zm00025a010059
Brachypodium PNT69746 , KQK12833 , KQK12836 , KQK00812 , KQK20829 , KQK20828 , KQJ86709 , PNT73998 , PNT73999 , KQJ84217
Barley HORVU6Hr1G066470.9 , HORVU6Hr1G066470.8 , HORVU6Hr1G066470.5 , HORVU6Hr1G066470.4 , HORVU6Hr1G066470.1 , HORVU6Hr1G066470.2 , HORVU6Hr1G066470.11 , HORVU6Hr1G066470.10 , HORVU6Hr1G066470.13 , HORVU6Hr1G066470.15 , HORVU6Hr1G066470.14 , HORVU6Hr1G066470.17 , HORVU6Hr1G066470.16 , HORVU2Hr1G058530.5 , HORVU2Hr1G058530.4 , HORVU2Hr1G058530.1 , HORVU2Hr1G058530.3 , HORVU2Hr1G058530.2 , HORVU6Hr1G094990.7 , HORVU6Hr1G094990.6 , HORVU6Hr1G094990.5 , HORVU6Hr1G094990.4 , HORVU6Hr1G094990.3 , HORVU6Hr1G094990.2 , HORVU6Hr1G094990.1 , HORVU6Hr1G094990.8 , HORVU5Hr1G103830.4 , HORVU5Hr1G103830.5 , HORVU5Hr1G103830.6 , HORVU5Hr1G103830.7 , HORVU5Hr1G103830.1 , HORVU5Hr1G103830.2 , HORVU4Hr1G019530.8 , HORVU4Hr1G019530.4 , HORVU4Hr1G019530.6 , HORVU4Hr1G019530.7 , HORVU4Hr1G019530.1 , HORVU4Hr1G019530.2 , HORVU4Hr1G019530.3 , HORVU5Hr1G044550.1 , HORVU5Hr1G044550.3 , HORVU5Hr1G044550.2
Wheat TraesCS5B02G428700 , TraesCS5D02G434500 , TraesCS5A02G426800 , TraesCS5A02G426800 , TraesCS2B02G269200 , TraesCS2B02G269200 , TraesCS2B02G269200 , TraesCS2D02G456400 , TraesCS5D02G434500 , TraesCS5B02G428400 , TraesCS5B02G428400 , TraesCS4B02G109800 , TraesCS6B02G288600 , TraesCS4D02G107200 , TraesCS6A02G261200 , TraesCS4A02G206200 , TraesCS4A02G206200 , TraesCS2A02G456100 , TraesCS6D02G242000 , TraesCS6D02G242000 , TraesCS5D02G434800 , TraesCS5D02G434800 , TraesCS2B02G478100 , TraesCS6A02G421000 , TraesCS2D02G249900 , TraesCS2D02G249900 , TraesCS5A02G426500 , TraesCS4B02G109800 , TraesCS2A02G248200 , TraesCS2A02G248200 , TraesCS2A02G248200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G040800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
2 Sobic.009G094800 sugar porter, putative, expressed -
3 Sobic.001G544500 expressed protein -
4 Sobic.002G174900 cysteine desulfurase 1, mitochondrial precursor, putative, expressed K04487: iscS, cysteine desulfurase
5 Sobic.008G001400 expressed protein -
6 Sobic.004G135300 - -
7 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
8 Sobic.003G368800 expressed protein -
9 Sobic.006G263000 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
10 Sobic.001G261597 - K07904: Ras-related protein Rab-11A
11 Sobic.004G183800 AAA family ATPase, putative, expressed K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
12 Sobic.009G082200 TKL_IRAK_DUF26-lc22 - DUF26 kinases have homology to DUF26 containing loci, expressed -
13 Sobic.005G084400 la domain containing protein, expressed K15191: La-related protein 7
14 Sobic.007G222900 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
15 Sobic.003G285000 OsFBX85 - F-box domain containing protein, expressed -
16 Sobic.010G113000 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
17 Sobic.004G189900 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed K13418: somatic embryogenesis receptor kinase 1
18 Sobic.003G308700 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
19 Sobic.002G125900 ORM1, putative, expressed -
20 Sobic.002G273700 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic002G040800 Sobic002G040800 Sobic010G228700 Sobic010G228700 Sobic002G040800--Sobic010G228700 Sobic009G094800 Sobic009G094800 Sobic002G040800--Sobic009G094800 Sobic001G544500 Sobic001G544500 Sobic002G040800--Sobic001G544500 Sobic002G174900 Sobic002G174900 Sobic002G040800--Sobic002G174900 Sobic008G001400 Sobic008G001400 Sobic002G040800--Sobic008G001400 Sobic004G135300 Sobic004G135300 Sobic002G040800--Sobic004G135300 Sobic006G042200 Sobic006G042200 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic006G263000 Sobic006G263000 Sobic002G040800--Sobic006G263000 Sobic010G228700--Sobic001G544500 Sobic010G228700--Sobic002G040800 Sobic009G105800 Sobic009G105800 Sobic010G228700--Sobic009G105800 Sobic009G105200 Sobic009G105200 Sobic010G228700--Sobic009G105200 Sobic010G171100 Sobic010G171100 Sobic010G228700--Sobic010G171100 Sobic007G000300 Sobic007G000300 Sobic010G228700--Sobic007G000300 Sobic002G238000 Sobic002G238000 Sobic010G228700--Sobic002G238000 Sobic001G119900 Sobic001G119900 Sobic010G228700--Sobic001G119900 Sobic006G125900 Sobic006G125900 Sobic010G228700--Sobic006G125900 Sobic009G094800--Sobic002G040800 Sobic009G094800--Sobic002G174900 Sobic003G308700 Sobic003G308700 Sobic009G094800--Sobic003G308700 Sobic001G429300 Sobic001G429300 Sobic009G094800--Sobic001G429300 Sobic007G062500 Sobic007G062500 Sobic009G094800--Sobic007G062500 Sobic008G081150 Sobic008G081150 Sobic009G094800--Sobic008G081150 Sobic001G427500 Sobic001G427500 Sobic009G094800--Sobic001G427500 Sobic006G028300 Sobic006G028300 Sobic009G094800--Sobic006G028300 Sobic001G031300 Sobic001G031300 Sobic009G094800--Sobic001G031300 Sobic001G544500--Sobic010G228700 Sobic003G285000 Sobic003G285000 Sobic001G544500--Sobic003G285000 Sobic001G544500--Sobic002G040800 Sobic008G051200 Sobic008G051200 Sobic001G544500--Sobic008G051200 Sobic001G222250 Sobic001G222250 Sobic001G544500--Sobic001G222250 Sobic001G544500--Sobic009G105200 Sobic001G453400 Sobic001G453400 Sobic001G544500--Sobic001G453400 Sobic004G321700 Sobic004G321700 Sobic001G544500--Sobic004G321700 Sobic001G003500 Sobic001G003500 Sobic001G544500--Sobic001G003500 Sobic002G174900--Sobic009G094800 Sobic002G174900--Sobic003G368800 Sobic002G174900--Sobic003G308700 Sobic002G174900--Sobic002G040800 Sobic008G165700 Sobic008G165700 Sobic002G174900--Sobic008G165700 Sobic001G377000 Sobic001G377000 Sobic002G174900--Sobic001G377000 Sobic006G171700 Sobic006G171700 Sobic002G174900--Sobic006G171700 Sobic007G148200 Sobic007G148200 Sobic002G174900--Sobic007G148200 Sobic001G279200 Sobic001G279200 Sobic002G174900--Sobic001G279200 Sobic008G001400--Sobic002G040800 Sobic010G113000 Sobic010G113000 Sobic008G001400--Sobic010G113000 Sobic005G129400 Sobic005G129400 Sobic008G001400--Sobic005G129400 Sobic004G175200 Sobic004G175200 Sobic008G001400--Sobic004G175200 Sobic007G120401 Sobic007G120401 Sobic008G001400--Sobic007G120401 Sobic002G273700 Sobic002G273700 Sobic008G001400--Sobic002G273700 Sobic008G001400--Sobic002G174900 Sobic003G206800 Sobic003G206800 Sobic008G001400--Sobic003G206800 Sobic009G082200 Sobic009G082200 Sobic008G001400--Sobic009G082200 Sobic003G084900 Sobic003G084900 Sobic004G135300--Sobic003G084900 Sobic004G135300--Sobic001G222250 Sobic004G135300--Sobic006G042200 Sobic001G409600 Sobic001G409600 Sobic004G135300--Sobic001G409600 Sobic006G273200 Sobic006G273200 Sobic004G135300--Sobic006G273200 Sobic003G088700 Sobic003G088700 Sobic004G135300--Sobic003G088700 Sobic005G128400 Sobic005G128400 Sobic004G135300--Sobic005G128400 Sobic007G009400 Sobic007G009400 Sobic004G135300--Sobic007G009400 Sobic001G267900 Sobic001G267900 Sobic004G135300--Sobic001G267900 Sobic006G042200--Sobic004G135300 Sobic007G054100 Sobic007G054100 Sobic006G042200--Sobic007G054100 Sobic006G042200--Sobic001G222250 Sobic004G174900 Sobic004G174900 Sobic006G042200--Sobic004G174900 Sobic008G125600 Sobic008G125600 Sobic006G042200--Sobic008G125600 Sobic004G010101 Sobic004G010101 Sobic006G042200--Sobic004G010101 Sobic009G008100 Sobic009G008100 Sobic006G042200--Sobic009G008100 Sobic002G073900 Sobic002G073900 Sobic006G042200--Sobic002G073900 Sobic006G042200--Sobic002G040800 Sobic001G144600 Sobic001G144600 Sobic003G368800--Sobic001G144600 Sobic003G368800--Sobic002G174900 Sobic005G025300 Sobic005G025300 Sobic003G368800--Sobic005G025300 Sobic003G368800--Sobic002G040800 Sobic004G147200 Sobic004G147200 Sobic003G368800--Sobic004G147200 Sobic002G227200 Sobic002G227200 Sobic003G368800--Sobic002G227200 Sobic004G227300 Sobic004G227300 Sobic003G368800--Sobic004G227300 Sobic001G276200 Sobic001G276200 Sobic003G368800--Sobic001G276200 Sobic003G368800--Sobic001G429300 Sobic002G309800 Sobic002G309800 Sobic006G263000--Sobic002G309800 Sobic002G125900 Sobic002G125900 Sobic006G263000--Sobic002G125900 Sobic006G263000--Sobic001G031300 Sobic001G222900 Sobic001G222900 Sobic006G263000--Sobic001G222900 Sobic005G110475 Sobic005G110475 Sobic006G263000--Sobic005G110475 Sobic001G298600 Sobic001G298600 Sobic006G263000--Sobic001G298600 Sobic006G263000--Sobic001G222250 Sobic002G234700 Sobic002G234700 Sobic006G263000--Sobic002G234700 Sobic006G263000--Sobic002G040800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.