Gene annotation
Transcriptome id Sobic.003G308700.1
Synonym Sb03g035720, ATNPR3, NPR3
Functional annotation BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed
UniProt C5XKY6
Pfam PF00651 PF11900 PF12313
Panther DB PTHR24413 PTHR24413:SF78
NCBI CDD KOG0512; Fetal globin-inducing factor (contains ankyrin repeats)
KEGG Orthology K14508; regulatory protein NPR1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G45110 : NPR1-like protein 3
RAP-DB (Rice) LOC_Os01g56200.1 : BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed
MaizeGDB (Corn) Zm00025a039933
Brachypodium KQK09934
Barley HORVU3Hr1G074640.4 , HORVU3Hr1G074640.1 , HORVU3Hr1G074640.2 , HORVU3Hr1G074640.3
Wheat TraesCS3D02G302900 , TraesCS3A02G298800 , TraesCS3A02G298800 , TraesCS3B02G337700 , TraesCS3B02G337700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G308700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G073900 expressed protein -
2 Sobic.007G054100 stress-induced protein, putative, expressed -
3 Sobic.002G174900 cysteine desulfurase 1, mitochondrial precursor, putative, expressed K04487: iscS, cysteine desulfurase
4 Sobic.002G273700 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
5 Sobic.006G172900 scarecrow, putative, expressed -
6 Sobic.009G094800 sugar porter, putative, expressed -
7 Sobic.001G387600 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
8 Sobic.009G008100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
9 Sobic.002G187801 - K03134: transcription initiation factor TFIID subunit 10
10 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.001G284800 histone H3, putative, expressed K11253: histone H3
12 Sobic.003G408400 PCF-like (ClassI) Subclade 3 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
13 Sobic.009G205600 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
14 Sobic.004G275200 zinc-binding protein, putative, expressed -
15 Sobic.004G096300 protein phosphatase 2C, putative, expressed -
16 Sobic.003G413500 expressed protein -
17 Sobic.003G221800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.009G057700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
19 Sobic.003G153800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein beta-fructofuranosidase (Os)(PubMedID : 27208977)@neutral/alkaline invertase, putative, expressed -
20 Sobic.010G265800 tyrosine protein kinase domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G308700 Sobic003G308700 Sobic002G073900 Sobic002G073900 Sobic003G308700--Sobic002G073900 Sobic007G054100 Sobic007G054100 Sobic003G308700--Sobic007G054100 Sobic002G174900 Sobic002G174900 Sobic003G308700--Sobic002G174900 Sobic002G273700 Sobic002G273700 Sobic003G308700--Sobic002G273700 Sobic006G172900 Sobic006G172900 Sobic003G308700--Sobic006G172900 Sobic009G094800 Sobic009G094800 Sobic003G308700--Sobic009G094800 Sobic001G387600 Sobic001G387600 Sobic003G308700--Sobic001G387600 Sobic009G008100 Sobic009G008100 Sobic003G308700--Sobic009G008100 Sobic002G187801 Sobic002G187801 Sobic003G308700--Sobic002G187801 Sobic002G073900--Sobic003G308700 Sobic005G072200 Sobic005G072200 Sobic002G073900--Sobic005G072200 Sobic006G042200 Sobic006G042200 Sobic002G073900--Sobic006G042200 Sobic002G073900--Sobic007G054100 Sobic001G261597 Sobic001G261597 Sobic002G073900--Sobic001G261597 Sobic004G092000 Sobic004G092000 Sobic002G073900--Sobic004G092000 Sobic002G073900--Sobic009G008100 Sobic004G227300 Sobic004G227300 Sobic002G073900--Sobic004G227300 Sobic010G009400 Sobic010G009400 Sobic002G073900--Sobic010G009400 Sobic007G054100--Sobic003G308700 Sobic007G054100--Sobic006G042200 Sobic007G054100--Sobic002G273700 Sobic007G054100--Sobic002G073900 Sobic003G153800 Sobic003G153800 Sobic007G054100--Sobic003G153800 Sobic007G054100--Sobic002G174900 Sobic007G054100--Sobic002G187801 Sobic004G096300 Sobic004G096300 Sobic007G054100--Sobic004G096300 Sobic005G090600 Sobic005G090600 Sobic007G054100--Sobic005G090600 Sobic002G174900--Sobic009G094800 Sobic003G368800 Sobic003G368800 Sobic002G174900--Sobic003G368800 Sobic002G174900--Sobic003G308700 Sobic002G040800 Sobic002G040800 Sobic002G174900--Sobic002G040800 Sobic008G165700 Sobic008G165700 Sobic002G174900--Sobic008G165700 Sobic001G377000 Sobic001G377000 Sobic002G174900--Sobic001G377000 Sobic006G171700 Sobic006G171700 Sobic002G174900--Sobic006G171700 Sobic007G148200 Sobic007G148200 Sobic002G174900--Sobic007G148200 Sobic001G279200 Sobic001G279200 Sobic002G174900--Sobic001G279200 Sobic002G273700--Sobic007G054100 Sobic002G273700--Sobic003G308700 Sobic004G340700 Sobic004G340700 Sobic002G273700--Sobic004G340700 Sobic002G373100 Sobic002G373100 Sobic002G273700--Sobic002G373100 Sobic002G273700--Sobic002G040800 Sobic008G001400 Sobic008G001400 Sobic002G273700--Sobic008G001400 Sobic007G120401 Sobic007G120401 Sobic002G273700--Sobic007G120401 Sobic009G082200 Sobic009G082200 Sobic002G273700--Sobic009G082200 Sobic002G273700--Sobic006G042200 Sobic007G152101 Sobic007G152101 Sobic006G172900--Sobic007G152101 Sobic004G113800 Sobic004G113800 Sobic006G172900--Sobic004G113800 Sobic006G172900--Sobic003G308700 Sobic010G214000 Sobic010G214000 Sobic006G172900--Sobic010G214000 Sobic001G053900 Sobic001G053900 Sobic006G172900--Sobic001G053900 Sobic008G152200 Sobic008G152200 Sobic006G172900--Sobic008G152200 Sobic008G175800 Sobic008G175800 Sobic006G172900--Sobic008G175800 Sobic009G232700 Sobic009G232700 Sobic006G172900--Sobic009G232700 Sobic006G043901 Sobic006G043901 Sobic006G172900--Sobic006G043901 Sobic009G094800--Sobic002G040800 Sobic009G094800--Sobic002G174900 Sobic009G094800--Sobic003G308700 Sobic001G429300 Sobic001G429300 Sobic009G094800--Sobic001G429300 Sobic007G062500 Sobic007G062500 Sobic009G094800--Sobic007G062500 Sobic008G081150 Sobic008G081150 Sobic009G094800--Sobic008G081150 Sobic001G427500 Sobic001G427500 Sobic009G094800--Sobic001G427500 Sobic006G028300 Sobic006G028300 Sobic009G094800--Sobic006G028300 Sobic001G031300 Sobic001G031300 Sobic009G094800--Sobic001G031300 Sobic003G309900 Sobic003G309900 Sobic001G387600--Sobic003G309900 Sobic006G119800 Sobic006G119800 Sobic001G387600--Sobic006G119800 Sobic003G413500 Sobic003G413500 Sobic001G387600--Sobic003G413500 Sobic009G233300 Sobic009G233300 Sobic001G387600--Sobic009G233300 Sobic001G191600 Sobic001G191600 Sobic001G387600--Sobic001G191600 Sobic008G146900 Sobic008G146900 Sobic001G387600--Sobic008G146900 Sobic001G222250 Sobic001G222250 Sobic001G387600--Sobic001G222250 Sobic001G253700 Sobic001G253700 Sobic001G387600--Sobic001G253700 Sobic001G387600--Sobic010G009400 Sobic009G057700 Sobic009G057700 Sobic009G008100--Sobic009G057700 Sobic009G008100--Sobic006G042200 Sobic009G008100--Sobic003G308700 Sobic009G008100--Sobic002G073900 Sobic009G008100--Sobic004G227300 Sobic009G008100--Sobic001G222250 Sobic009G008100--Sobic002G040800 Sobic009G008100--Sobic001G261597 Sobic006G043300 Sobic006G043300 Sobic009G008100--Sobic006G043300 Sobic002G187801--Sobic008G165700 Sobic002G187801--Sobic001G253700 Sobic002G187801--Sobic009G233300 Sobic006G273200 Sobic006G273200 Sobic002G187801--Sobic006G273200 Sobic001G284800 Sobic001G284800 Sobic002G187801--Sobic001G284800 Sobic004G003501 Sobic004G003501 Sobic002G187801--Sobic004G003501 Sobic003G000150 Sobic003G000150 Sobic002G187801--Sobic003G000150 Sobic002G092300 Sobic002G092300 Sobic002G187801--Sobic002G092300 Sobic002G365100 Sobic002G365100 Sobic002G187801--Sobic002G365100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.