Gene annotation
Transcriptome id Sobic.002G073900.1
Synonym Sb02g006180
Functional annotation expressed protein
UniProt C5XCR0
Pfam PF03168
Panther DB PTHR31234 PTHR31234:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G13270 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RAP-DB (Rice) LOC_Os07g10610.1 : expressed protein
MaizeGDB (Corn) Zm00025a045367
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G073900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G308700 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
2 Sobic.005G072200 lipase, putative, expressed -
3 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
4 Sobic.007G054100 stress-induced protein, putative, expressed -
5 Sobic.001G261597 - K07904: Ras-related protein Rab-11A
6 Sobic.004G092000 expressed protein -
7 Sobic.009G008100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
8 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
9 Sobic.010G009400 G-protein alpha subunit, putative, expressed -
10 Sobic.009G205600 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
11 Sobic.001G351100 LOL3, putative, expressed -
12 Sobic.003G359900 C2 domain containing protein, expressed -
13 Sobic.009G027350 - -
14 Sobic.002G187801 - K03134: transcription initiation factor TFIID subunit 10
15 Sobic.005G090600 peptide transporter PTR2, putative, expressed -
16 Sobic.009G032400 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
17 Sobic.004G174900 - -
18 Sobic.003G206800 DUF538 domain containing protein, putative, expressed -
19 Sobic.002G048800 expressed protein -
20 Sobic.001G427500 B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -


Gene co-expression network
sample Sobic002G073900 Sobic002G073900 Sobic003G308700 Sobic003G308700 Sobic002G073900--Sobic003G308700 Sobic005G072200 Sobic005G072200 Sobic002G073900--Sobic005G072200 Sobic006G042200 Sobic006G042200 Sobic002G073900--Sobic006G042200 Sobic007G054100 Sobic007G054100 Sobic002G073900--Sobic007G054100 Sobic001G261597 Sobic001G261597 Sobic002G073900--Sobic001G261597 Sobic004G092000 Sobic004G092000 Sobic002G073900--Sobic004G092000 Sobic009G008100 Sobic009G008100 Sobic002G073900--Sobic009G008100 Sobic004G227300 Sobic004G227300 Sobic002G073900--Sobic004G227300 Sobic010G009400 Sobic010G009400 Sobic002G073900--Sobic010G009400 Sobic003G308700--Sobic002G073900 Sobic003G308700--Sobic007G054100 Sobic002G174900 Sobic002G174900 Sobic003G308700--Sobic002G174900 Sobic002G273700 Sobic002G273700 Sobic003G308700--Sobic002G273700 Sobic006G172900 Sobic006G172900 Sobic003G308700--Sobic006G172900 Sobic009G094800 Sobic009G094800 Sobic003G308700--Sobic009G094800 Sobic001G387600 Sobic001G387600 Sobic003G308700--Sobic001G387600 Sobic003G308700--Sobic009G008100 Sobic002G187801 Sobic002G187801 Sobic003G308700--Sobic002G187801 Sobic003G359900 Sobic003G359900 Sobic005G072200--Sobic003G359900 Sobic006G052200 Sobic006G052200 Sobic005G072200--Sobic006G052200 Sobic005G072200--Sobic002G073900 Sobic010G080300 Sobic010G080300 Sobic005G072200--Sobic010G080300 Sobic009G190800 Sobic009G190800 Sobic005G072200--Sobic009G190800 Sobic001G351100 Sobic001G351100 Sobic005G072200--Sobic001G351100 Sobic003G402200 Sobic003G402200 Sobic005G072200--Sobic003G402200 Sobic004G096100 Sobic004G096100 Sobic005G072200--Sobic004G096100 Sobic001G314900 Sobic001G314900 Sobic005G072200--Sobic001G314900 Sobic004G135300 Sobic004G135300 Sobic006G042200--Sobic004G135300 Sobic006G042200--Sobic007G054100 Sobic001G222250 Sobic001G222250 Sobic006G042200--Sobic001G222250 Sobic004G174900 Sobic004G174900 Sobic006G042200--Sobic004G174900 Sobic008G125600 Sobic008G125600 Sobic006G042200--Sobic008G125600 Sobic004G010101 Sobic004G010101 Sobic006G042200--Sobic004G010101 Sobic006G042200--Sobic009G008100 Sobic006G042200--Sobic002G073900 Sobic002G040800 Sobic002G040800 Sobic006G042200--Sobic002G040800 Sobic007G054100--Sobic003G308700 Sobic007G054100--Sobic006G042200 Sobic007G054100--Sobic002G273700 Sobic007G054100--Sobic002G073900 Sobic003G153800 Sobic003G153800 Sobic007G054100--Sobic003G153800 Sobic007G054100--Sobic002G174900 Sobic007G054100--Sobic002G187801 Sobic004G096300 Sobic004G096300 Sobic007G054100--Sobic004G096300 Sobic005G090600 Sobic005G090600 Sobic007G054100--Sobic005G090600 Sobic001G261597--Sobic004G227300 Sobic003G000150 Sobic003G000150 Sobic001G261597--Sobic003G000150 Sobic004G214100 Sobic004G214100 Sobic001G261597--Sobic004G214100 Sobic001G261597--Sobic002G073900 Sobic001G261597--Sobic003G359900 Sobic001G427500 Sobic001G427500 Sobic001G261597--Sobic001G427500 Sobic001G261597--Sobic005G072200 Sobic001G261597--Sobic002G040800 Sobic001G261597--Sobic009G190800 Sobic003G376200 Sobic003G376200 Sobic004G092000--Sobic003G376200 Sobic003G339900 Sobic003G339900 Sobic004G092000--Sobic003G339900 Sobic001G339600 Sobic001G339600 Sobic004G092000--Sobic001G339600 Sobic001G314300 Sobic001G314300 Sobic004G092000--Sobic001G314300 Sobic004G092000--Sobic002G073900 Sobic003G138400 Sobic003G138400 Sobic004G092000--Sobic003G138400 Sobic009G227800 Sobic009G227800 Sobic004G092000--Sobic009G227800 Sobic002G160600 Sobic002G160600 Sobic004G092000--Sobic002G160600 Sobic010G089700 Sobic010G089700 Sobic004G092000--Sobic010G089700 Sobic009G057700 Sobic009G057700 Sobic009G008100--Sobic009G057700 Sobic009G008100--Sobic006G042200 Sobic009G008100--Sobic003G308700 Sobic009G008100--Sobic002G073900 Sobic009G008100--Sobic004G227300 Sobic009G008100--Sobic001G222250 Sobic009G008100--Sobic002G040800 Sobic009G008100--Sobic001G261597 Sobic006G043300 Sobic006G043300 Sobic009G008100--Sobic006G043300 Sobic004G227300--Sobic001G427500 Sobic004G227300--Sobic001G261597 Sobic006G171700 Sobic006G171700 Sobic004G227300--Sobic006G171700 Sobic004G227300--Sobic003G359900 Sobic003G299000 Sobic003G299000 Sobic004G227300--Sobic003G299000 Sobic004G227300--Sobic004G214100 Sobic002G259400 Sobic002G259400 Sobic004G227300--Sobic002G259400 Sobic007G062500 Sobic007G062500 Sobic004G227300--Sobic007G062500 Sobic006G119800 Sobic006G119800 Sobic004G227300--Sobic006G119800 Sobic002G251700 Sobic002G251700 Sobic010G009400--Sobic002G251700 Sobic005G229400 Sobic005G229400 Sobic010G009400--Sobic005G229400 Sobic002G301800 Sobic002G301800 Sobic010G009400--Sobic002G301800 Sobic001G162100 Sobic001G162100 Sobic010G009400--Sobic001G162100 Sobic006G225600 Sobic006G225600 Sobic010G009400--Sobic006G225600 Sobic010G009400--Sobic001G387600 Sobic003G413500 Sobic003G413500 Sobic010G009400--Sobic003G413500 Sobic010G009400--Sobic004G227300 Sobic010G009400--Sobic006G119800
Octagon: transcription factors


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