Gene annotation
Transcriptome id Sobic.004G227300.2,Sobic.004G227300.1,Sobic.004G227300.3
Synonym
Functional annotation vacuolar protein-sorting protein bro1, putative, expressed
UniProt A0A194YR46
Pfam PF03097
Panther DB PTHR23030
NCBI CDD -
KEGG Orthology K12200; PDCD6IP, ALIX, programmed cell death 6-interacting protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G15130 : Endosomal targeting BRO1-like domain-containing protein
RAP-DB (Rice) LOC_Os02g42580.1 : vacuolar protein-sorting protein bro1, putative, expressed
MaizeGDB (Corn) Zm00025a006474 , Zm00025a021007
Brachypodium PNT69118
Barley HORVU1Hr1G043660.4 , HORVU1Hr1G043660.5 , HORVU1Hr1G043660.2 , HORVU1Hr1G043660.3 , HORVU1Hr1G043660.1 , HORVU6Hr1G060100.1
Wheat TraesCS1B02G180900 , TraesCS1B02G180900 , TraesCS1B02G180900 , TraesCS6B02G263700 , TraesCS6A02G235000 , TraesCS6D02G217600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G427500 B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
2 Sobic.001G261597 - K07904: Ras-related protein Rab-11A
3 Sobic.006G171700 - -
4 Sobic.003G359900 C2 domain containing protein, expressed -
5 Sobic.003G299000 protein of unknown function DUF1421 domain containing protein, expressed -
6 Sobic.004G214100 "BC14(Ortholog in rice:Zhang et al., 2011)"(PubMedID : 31659885)@transporter family protein, putative, expressed K15281: solute carrier family 35
7 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
8 Sobic.007G062500 expressed protein -
9 Sobic.006G119800 leucine rich repeat containing protein, expressed -
10 Sobic.008G165700 expressed protein -
11 Sobic.002G122600 ankyrin repeat domain containing protein, expressed -
12 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
13 Sobic.001G387600 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
14 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
15 Sobic.010G009400 G-protein alpha subunit, putative, expressed -
16 Sobic.004G250300 eukaryotic aspartyl protease domain containing protein, expressed -
17 Sobic.001G004700 expressed protein -
18 Sobic.002G073900 expressed protein -
19 Sobic.009G174000 expressed protein -
20 Sobic.009G017400 "gsn1/LARGE8(Ortholog in rice:Gou et al., 2018(PubMedID : 31659915)@dual specificity protein phosphatase, putative, expressed -


Gene co-expression network
sample Sobic004G227300 Sobic004G227300 Sobic001G427500 Sobic001G427500 Sobic004G227300--Sobic001G427500 Sobic001G261597 Sobic001G261597 Sobic004G227300--Sobic001G261597 Sobic006G171700 Sobic006G171700 Sobic004G227300--Sobic006G171700 Sobic003G359900 Sobic003G359900 Sobic004G227300--Sobic003G359900 Sobic003G299000 Sobic003G299000 Sobic004G227300--Sobic003G299000 Sobic004G214100 Sobic004G214100 Sobic004G227300--Sobic004G214100 Sobic002G259400 Sobic002G259400 Sobic004G227300--Sobic002G259400 Sobic007G062500 Sobic007G062500 Sobic004G227300--Sobic007G062500 Sobic006G119800 Sobic006G119800 Sobic004G227300--Sobic006G119800 Sobic002G339500 Sobic002G339500 Sobic001G427500--Sobic002G339500 Sobic002G193400 Sobic002G193400 Sobic001G427500--Sobic002G193400 Sobic001G427500--Sobic004G227300 Sobic006G004600 Sobic006G004600 Sobic001G427500--Sobic006G004600 Sobic001G427500--Sobic007G062500 Sobic001G417900 Sobic001G417900 Sobic001G427500--Sobic001G417900 Sobic009G017400 Sobic009G017400 Sobic001G427500--Sobic009G017400 Sobic001G427500--Sobic001G261597 Sobic001G022600 Sobic001G022600 Sobic001G427500--Sobic001G022600 Sobic001G261597--Sobic004G227300 Sobic003G000150 Sobic003G000150 Sobic001G261597--Sobic003G000150 Sobic001G261597--Sobic004G214100 Sobic002G073900 Sobic002G073900 Sobic001G261597--Sobic002G073900 Sobic001G261597--Sobic003G359900 Sobic001G261597--Sobic001G427500 Sobic005G072200 Sobic005G072200 Sobic001G261597--Sobic005G072200 Sobic002G040800 Sobic002G040800 Sobic001G261597--Sobic002G040800 Sobic009G190800 Sobic009G190800 Sobic001G261597--Sobic009G190800 Sobic006G171700--Sobic004G227300 Sobic003G123000 Sobic003G123000 Sobic006G171700--Sobic003G123000 Sobic002G122600 Sobic002G122600 Sobic006G171700--Sobic002G122600 Sobic008G165700 Sobic008G165700 Sobic006G171700--Sobic008G165700 Sobic010G280100 Sobic010G280100 Sobic006G171700--Sobic010G280100 Sobic001G429300 Sobic001G429300 Sobic006G171700--Sobic001G429300 Sobic006G171700--Sobic009G017400 Sobic010G268300 Sobic010G268300 Sobic006G171700--Sobic010G268300 Sobic002G174900 Sobic002G174900 Sobic006G171700--Sobic002G174900 Sobic003G359900--Sobic005G072200 Sobic003G359900--Sobic009G190800 Sobic003G359900--Sobic004G227300 Sobic003G359900--Sobic001G261597 Sobic009G205600 Sobic009G205600 Sobic003G359900--Sobic009G205600 Sobic003G359900--Sobic004G214100 Sobic003G261900 Sobic003G261900 Sobic003G359900--Sobic003G261900 Sobic006G065900 Sobic006G065900 Sobic003G359900--Sobic006G065900 Sobic002G271600 Sobic002G271600 Sobic003G359900--Sobic002G271600 Sobic003G077900 Sobic003G077900 Sobic003G299000--Sobic003G077900 Sobic004G348900 Sobic004G348900 Sobic003G299000--Sobic004G348900 Sobic001G206900 Sobic001G206900 Sobic003G299000--Sobic001G206900 Sobic003G436300 Sobic003G436300 Sobic003G299000--Sobic003G436300 Sobic003G299000--Sobic004G227300 Sobic003G299000--Sobic001G417900 Sobic002G418700 Sobic002G418700 Sobic003G299000--Sobic002G418700 Sobic003G217400 Sobic003G217400 Sobic003G299000--Sobic003G217400 Sobic002G242200 Sobic002G242200 Sobic003G299000--Sobic002G242200 Sobic004G214100--Sobic001G022600 Sobic004G214100--Sobic004G227300 Sobic004G214100--Sobic009G190800 Sobic004G214100--Sobic001G261597 Sobic004G214100--Sobic003G359900 Sobic006G269000 Sobic006G269000 Sobic004G214100--Sobic006G269000 Sobic007G168200 Sobic007G168200 Sobic004G214100--Sobic007G168200 Sobic004G214100--Sobic001G427500 Sobic010G009400 Sobic010G009400 Sobic004G214100--Sobic010G009400 Sobic003G119400 Sobic003G119400 Sobic002G259400--Sobic003G119400 Sobic004G074300 Sobic004G074300 Sobic002G259400--Sobic004G074300 Sobic001G041200 Sobic001G041200 Sobic002G259400--Sobic001G041200 Sobic002G268400 Sobic002G268400 Sobic002G259400--Sobic002G268400 Sobic009G033900 Sobic009G033900 Sobic002G259400--Sobic009G033900 Sobic010G269100 Sobic010G269100 Sobic002G259400--Sobic010G269100 Sobic006G281500 Sobic006G281500 Sobic002G259400--Sobic006G281500 Sobic001G263000 Sobic001G263000 Sobic002G259400--Sobic001G263000 Sobic010G085200 Sobic010G085200 Sobic002G259400--Sobic010G085200 Sobic001G043800 Sobic001G043800 Sobic007G062500--Sobic001G043800 Sobic007G062500--Sobic001G427500 Sobic007G062500--Sobic004G227300 Sobic004G086700 Sobic004G086700 Sobic007G062500--Sobic004G086700 Sobic010G184600 Sobic010G184600 Sobic007G062500--Sobic010G184600 Sobic009G094800 Sobic009G094800 Sobic007G062500--Sobic009G094800 Sobic001G053000 Sobic001G053000 Sobic007G062500--Sobic001G053000 Sobic004G174400 Sobic004G174400 Sobic007G062500--Sobic004G174400 Sobic007G062500--Sobic009G190800 Sobic001G281600 Sobic001G281600 Sobic006G119800--Sobic001G281600 Sobic001G387600 Sobic001G387600 Sobic006G119800--Sobic001G387600 Sobic004G121100 Sobic004G121100 Sobic006G119800--Sobic004G121100 Sobic007G019800 Sobic007G019800 Sobic006G119800--Sobic007G019800 Sobic006G273200 Sobic006G273200 Sobic006G119800--Sobic006G273200 Sobic010G068500 Sobic010G068500 Sobic006G119800--Sobic010G068500 Sobic004G301900 Sobic004G301900 Sobic006G119800--Sobic004G301900 Sobic004G119100 Sobic004G119100 Sobic006G119800--Sobic004G119100 Sobic009G233300 Sobic009G233300 Sobic006G119800--Sobic009G233300
Octagon: transcription factors


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