Gene annotation
Transcriptome id Sobic.006G054500.1
Synonym ATGP4, Sb06g014280
Functional annotation membrane-anchored ubiquitin-fold protein, putative, expressed
UniProt C5YEV4
Pfam PF13881
Panther DB PTHR13169:SF1 PTHR13169
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24990 : Ubiquitin family protein
RAP-DB (Rice) LOC_Os04g32270.1 : membrane-anchored ubiquitin-fold protein, putative, expressed
MaizeGDB (Corn) Zm00025a011730 , Zm00025a055912
Brachypodium -
Barley HORVU2Hr1G070670.1 , HORVU2Hr1G070670.2
Wheat TraesCS2D02G284500 , TraesCS2A02G285500 , TraesCS2B02G302600
Populus -


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cDNA sequences
Sobic.006G054500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G079700 pentatricopeptide, putative, expressed -
2 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
3 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
4 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
5 Sobic.002G113900 lipid binding protein, putative, expressed -
6 Sobic.004G074300 phytoene dehydrogenase-like, putative, expressed K16750: biogenesis of lysosome-related organelles complex 1 subunit 2
7 Sobic.001G364600 transmembrane protein 85, putative, expressed -
8 Sobic.002G273900 expressed protein -
9 Sobic.010G090900 membrane-anchored ubiquitin-fold protein, putative, expressed -
10 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
11 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
12 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
13 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
14 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
15 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
16 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A
17 Sobic.006G119800 leucine rich repeat containing protein, expressed -
18 Sobic.007G019800 expressed protein -
19 Sobic.006G118900 OsFBO17 - F-box and other domain containing protein, expressed -
20 Sobic.004G059000 serine/threonine-protein kinase HT1, putative, expressed -


Gene co-expression network
sample Sobic006G054500 Sobic006G054500 Sobic007G079700 Sobic007G079700 Sobic006G054500--Sobic007G079700 Sobic009G004600 Sobic009G004600 Sobic006G054500--Sobic009G004600 Sobic004G060600 Sobic004G060600 Sobic006G054500--Sobic004G060600 Sobic004G301900 Sobic004G301900 Sobic006G054500--Sobic004G301900 Sobic002G113900 Sobic002G113900 Sobic006G054500--Sobic002G113900 Sobic004G074300 Sobic004G074300 Sobic006G054500--Sobic004G074300 Sobic001G364600 Sobic001G364600 Sobic006G054500--Sobic001G364600 Sobic002G273900 Sobic002G273900 Sobic006G054500--Sobic002G273900 Sobic010G090900 Sobic010G090900 Sobic006G054500--Sobic010G090900 Sobic009G114800 Sobic009G114800 Sobic007G079700--Sobic009G114800 Sobic007G079700--Sobic006G054500 Sobic006G262900 Sobic006G262900 Sobic007G079700--Sobic006G262900 Sobic007G079700--Sobic002G273900 Sobic009G199700 Sobic009G199700 Sobic007G079700--Sobic009G199700 Sobic003G116700 Sobic003G116700 Sobic007G079700--Sobic003G116700 Sobic007G079700--Sobic004G301900 Sobic004G253000 Sobic004G253000 Sobic007G079700--Sobic004G253000 Sobic004G272300 Sobic004G272300 Sobic007G079700--Sobic004G272300 Sobic002G400000 Sobic002G400000 Sobic009G004600--Sobic002G400000 Sobic004G356900 Sobic004G356900 Sobic009G004600--Sobic004G356900 Sobic003G217400 Sobic003G217400 Sobic009G004600--Sobic003G217400 Sobic009G198500 Sobic009G198500 Sobic009G004600--Sobic009G198500 Sobic001G263000 Sobic001G263000 Sobic009G004600--Sobic001G263000 Sobic001G314500 Sobic001G314500 Sobic009G004600--Sobic001G314500 Sobic009G004600--Sobic002G113900 Sobic010G205300 Sobic010G205300 Sobic009G004600--Sobic010G205300 Sobic007G168600 Sobic007G168600 Sobic009G004600--Sobic007G168600 Sobic003G077900 Sobic003G077900 Sobic004G060600--Sobic003G077900 Sobic004G060600--Sobic002G400000 Sobic009G131100 Sobic009G131100 Sobic004G060600--Sobic009G131100 Sobic001G428100 Sobic001G428100 Sobic004G060600--Sobic001G428100 Sobic007G203700 Sobic007G203700 Sobic004G060600--Sobic007G203700 Sobic004G060600--Sobic009G198500 Sobic004G060600--Sobic007G168600 Sobic003G117300 Sobic003G117300 Sobic004G060600--Sobic003G117300 Sobic004G060600--Sobic001G364600 Sobic004G301900--Sobic010G090900 Sobic003G250500 Sobic003G250500 Sobic004G301900--Sobic003G250500 Sobic004G301900--Sobic002G113900 Sobic004G059000 Sobic004G059000 Sobic004G301900--Sobic004G059000 Sobic004G301900--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic004G301900--Sobic001G512600 Sobic007G019800 Sobic007G019800 Sobic004G301900--Sobic007G019800 Sobic001G051200 Sobic001G051200 Sobic004G301900--Sobic001G051200 Sobic004G301900--Sobic004G356900 Sobic006G270900 Sobic006G270900 Sobic002G113900--Sobic006G270900 Sobic002G113900--Sobic009G004600 Sobic004G226800 Sobic004G226800 Sobic002G113900--Sobic004G226800 Sobic006G049700 Sobic006G049700 Sobic002G113900--Sobic006G049700 Sobic002G113900--Sobic004G356900 Sobic002G113900--Sobic004G301900 Sobic002G113900--Sobic007G019800 Sobic004G104900 Sobic004G104900 Sobic002G113900--Sobic004G104900 Sobic002G268400 Sobic002G268400 Sobic002G113900--Sobic002G268400 Sobic004G074300--Sobic002G268400 Sobic003G119400 Sobic003G119400 Sobic004G074300--Sobic003G119400 Sobic001G152000 Sobic001G152000 Sobic004G074300--Sobic001G152000 Sobic009G033900 Sobic009G033900 Sobic004G074300--Sobic009G033900 Sobic004G074300--Sobic001G263000 Sobic002G259400 Sobic002G259400 Sobic004G074300--Sobic002G259400 Sobic010G057900 Sobic010G057900 Sobic004G074300--Sobic010G057900 Sobic004G077600 Sobic004G077600 Sobic004G074300--Sobic004G077600 Sobic004G074300--Sobic006G054500 Sobic010G277100 Sobic010G277100 Sobic001G364600--Sobic010G277100 Sobic001G364600--Sobic007G168600 Sobic001G364600--Sobic004G060600 Sobic001G364600--Sobic003G077900 Sobic001G364600--Sobic002G400000 Sobic003G050600 Sobic003G050600 Sobic001G364600--Sobic003G050600 Sobic003G127300 Sobic003G127300 Sobic001G364600--Sobic003G127300 Sobic001G364600--Sobic009G004600 Sobic001G364600--Sobic001G314500 Sobic002G273900--Sobic004G059000 Sobic002G273900--Sobic004G253000 Sobic002G273900--Sobic003G050600 Sobic002G273900--Sobic007G079700 Sobic002G273900--Sobic006G054500 Sobic002G273900--Sobic001G364600 Sobic007G097900 Sobic007G097900 Sobic002G273900--Sobic007G097900 Sobic002G273900--Sobic003G250500 Sobic008G128600 Sobic008G128600 Sobic002G273900--Sobic008G128600 Sobic010G090900--Sobic004G301900 Sobic010G090900--Sobic001G051200 Sobic001G098200 Sobic001G098200 Sobic010G090900--Sobic001G098200 Sobic001G123000 Sobic001G123000 Sobic010G090900--Sobic001G123000 Sobic006G119800 Sobic006G119800 Sobic010G090900--Sobic006G119800 Sobic004G119100 Sobic004G119100 Sobic010G090900--Sobic004G119100 Sobic010G090900--Sobic003G250500 Sobic010G090900--Sobic001G263000 Sobic002G092300 Sobic002G092300 Sobic010G090900--Sobic002G092300
Octagon: transcription factors


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