Gene annotation
Transcriptome id Sobic.007G079700.1
Synonym Sb07g006400
Functional annotation pentatricopeptide, putative, expressed
UniProt C5YIY3
Pfam PF02453
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G78895 : Reticulon family protein
RAP-DB (Rice) LOC_Os08g12850.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a054923
Brachypodium KQJ95645
Barley HORVU6Hr1G015490.1 , HORVU6Hr1G015490.3 , HORVU6Hr1G015490.2
Wheat TraesCS6A02G085200 , TraesCSU02G114100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G114800 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
2 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
3 Sobic.006G262900 expressed protein -
4 Sobic.002G273900 expressed protein -
5 Sobic.009G199700 expressed protein -
6 Sobic.003G116700 hydrolase, alpha/beta fold family domain containing protein, expressed -
7 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
8 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A
9 Sobic.004G272300 expressed protein -
10 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
11 Sobic.001G206000 acyltransferase, putative, expressed K00655: 1-acyl-sn-glycerol-3-phosphate acyltransferase
12 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
13 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
14 Sobic.001G098200 magnesium-dependent phosphatase 1, putative, expressed K17619: magnesium-dependent phosphatase 1
15 Sobic.002G123200 DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed K03009: RPB12, DNA-directed RNA polymerases I, II, and III subunit RPABC4
16 Sobic.010G090900 membrane-anchored ubiquitin-fold protein, putative, expressed -
17 Sobic.001G364600 transmembrane protein 85, putative, expressed -
18 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
19 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
20 Sobic.009G156300 pleckstrin homology domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G079700 Sobic007G079700 Sobic009G114800 Sobic009G114800 Sobic007G079700--Sobic009G114800 Sobic006G054500 Sobic006G054500 Sobic007G079700--Sobic006G054500 Sobic006G262900 Sobic006G262900 Sobic007G079700--Sobic006G262900 Sobic002G273900 Sobic002G273900 Sobic007G079700--Sobic002G273900 Sobic009G199700 Sobic009G199700 Sobic007G079700--Sobic009G199700 Sobic003G116700 Sobic003G116700 Sobic007G079700--Sobic003G116700 Sobic004G301900 Sobic004G301900 Sobic007G079700--Sobic004G301900 Sobic004G253000 Sobic004G253000 Sobic007G079700--Sobic004G253000 Sobic004G272300 Sobic004G272300 Sobic007G079700--Sobic004G272300 Sobic009G114800--Sobic007G079700 Sobic001G291100 Sobic001G291100 Sobic009G114800--Sobic001G291100 Sobic009G114800--Sobic004G253000 Sobic003G250500 Sobic003G250500 Sobic009G114800--Sobic003G250500 Sobic009G157200 Sobic009G157200 Sobic009G114800--Sobic009G157200 Sobic006G038400 Sobic006G038400 Sobic009G114800--Sobic006G038400 Sobic009G114800--Sobic004G301900 Sobic009G114800--Sobic003G116700 Sobic004G119000 Sobic004G119000 Sobic009G114800--Sobic004G119000 Sobic006G054500--Sobic007G079700 Sobic009G004600 Sobic009G004600 Sobic006G054500--Sobic009G004600 Sobic004G060600 Sobic004G060600 Sobic006G054500--Sobic004G060600 Sobic006G054500--Sobic004G301900 Sobic002G113900 Sobic002G113900 Sobic006G054500--Sobic002G113900 Sobic004G074300 Sobic004G074300 Sobic006G054500--Sobic004G074300 Sobic001G364600 Sobic001G364600 Sobic006G054500--Sobic001G364600 Sobic006G054500--Sobic002G273900 Sobic010G090900 Sobic010G090900 Sobic006G054500--Sobic010G090900 Sobic009G198500 Sobic009G198500 Sobic006G262900--Sobic009G198500 Sobic003G124800 Sobic003G124800 Sobic006G262900--Sobic003G124800 Sobic006G263900 Sobic006G263900 Sobic006G262900--Sobic006G263900 Sobic001G136900 Sobic001G136900 Sobic006G262900--Sobic001G136900 Sobic001G054200 Sobic001G054200 Sobic006G262900--Sobic001G054200 Sobic010G083700 Sobic010G083700 Sobic006G262900--Sobic010G083700 Sobic001G129300 Sobic001G129300 Sobic006G262900--Sobic001G129300 Sobic007G203700 Sobic007G203700 Sobic006G262900--Sobic007G203700 Sobic006G262900--Sobic007G079700 Sobic004G059000 Sobic004G059000 Sobic002G273900--Sobic004G059000 Sobic002G273900--Sobic004G253000 Sobic003G050600 Sobic003G050600 Sobic002G273900--Sobic003G050600 Sobic002G273900--Sobic007G079700 Sobic002G273900--Sobic006G054500 Sobic002G273900--Sobic001G364600 Sobic007G097900 Sobic007G097900 Sobic002G273900--Sobic007G097900 Sobic002G273900--Sobic003G250500 Sobic008G128600 Sobic008G128600 Sobic002G273900--Sobic008G128600 Sobic003G127300 Sobic003G127300 Sobic009G199700--Sobic003G127300 Sobic009G199700--Sobic007G203700 Sobic002G298300 Sobic002G298300 Sobic009G199700--Sobic002G298300 Sobic002G368400 Sobic002G368400 Sobic009G199700--Sobic002G368400 Sobic009G199700--Sobic007G079700 Sobic009G246950 Sobic009G246950 Sobic009G199700--Sobic009G246950 Sobic009G199700--Sobic004G060600 Sobic002G123200 Sobic002G123200 Sobic009G199700--Sobic002G123200 Sobic002G078400 Sobic002G078400 Sobic009G199700--Sobic002G078400 Sobic001G206000 Sobic001G206000 Sobic003G116700--Sobic001G206000 Sobic001G149700 Sobic001G149700 Sobic003G116700--Sobic001G149700 Sobic001G441600 Sobic001G441600 Sobic003G116700--Sobic001G441600 Sobic003G116700--Sobic007G079700 Sobic004G014000 Sobic004G014000 Sobic003G116700--Sobic004G014000 Sobic007G126200 Sobic007G126200 Sobic003G116700--Sobic007G126200 Sobic009G065000 Sobic009G065000 Sobic003G116700--Sobic009G065000 Sobic010G055500 Sobic010G055500 Sobic003G116700--Sobic010G055500 Sobic001G078500 Sobic001G078500 Sobic003G116700--Sobic001G078500 Sobic004G301900--Sobic010G090900 Sobic004G301900--Sobic003G250500 Sobic004G301900--Sobic002G113900 Sobic004G301900--Sobic004G059000 Sobic004G301900--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic004G301900--Sobic001G512600 Sobic007G019800 Sobic007G019800 Sobic004G301900--Sobic007G019800 Sobic001G051200 Sobic001G051200 Sobic004G301900--Sobic001G051200 Sobic004G356900 Sobic004G356900 Sobic004G301900--Sobic004G356900 Sobic004G253000--Sobic003G050600 Sobic004G253000--Sobic010G083700 Sobic001G098200 Sobic001G098200 Sobic004G253000--Sobic001G098200 Sobic003G015900 Sobic003G015900 Sobic004G253000--Sobic003G015900 Sobic004G253000--Sobic003G250500 Sobic004G253000--Sobic004G059000 Sobic004G253000--Sobic001G051200 Sobic004G253000--Sobic009G246950 Sobic003G000800 Sobic003G000800 Sobic004G253000--Sobic003G000800 Sobic004G272300--Sobic009G198500 Sobic004G300900 Sobic004G300900 Sobic004G272300--Sobic004G300900 Sobic001G005900 Sobic001G005900 Sobic004G272300--Sobic001G005900 Sobic007G168600 Sobic007G168600 Sobic004G272300--Sobic007G168600 Sobic004G272300--Sobic002G078400 Sobic004G272300--Sobic003G124800 Sobic004G351500 Sobic004G351500 Sobic004G272300--Sobic004G351500 Sobic002G400000 Sobic002G400000 Sobic004G272300--Sobic002G400000 Sobic001G314500 Sobic001G314500 Sobic004G272300--Sobic001G314500
Octagon: transcription factors


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