Gene annotation
Transcriptome id Sobic.002G123200.1
Synonym NRPD12, NRPB12, NRPE12
Functional annotation DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed
UniProt A0A1B6QAR9
Pfam PF03604
Panther DB PTHR12056
NCBI CDD KOG3507; DNA-directed RNA polymerase, subunit RPB7.0
KEGG Orthology K03009; RPB12, DNA-directed RNA polymerases I, II, and III subunit RPABC4
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G41010 : DNA directed RNA polymerase, 7 kDa subunit
RAP-DB (Rice) LOC_Os01g34614.1 : DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ83025 , KQJ95680 , KQK16431
Barley HORVU1Hr1G057950.1 , HORVU1Hr1G057950.3 , HORVU1Hr1G057950.2 , HORVU1Hr1G057950.4
Wheat TraesCS1A02G235600 , TraesCS1D02G236600 , TraesCS1B02G248100
Populus -


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cDNA sequences
Sobic.002G123200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G199700 expressed protein -
2 Sobic.007G079700 pentatricopeptide, putative, expressed -
3 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
4 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
5 Sobic.002G117200 B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
6 Sobic.004G186000 salt tolerant protein, putative, expressed -
7 Sobic.008G128600 miro, putative, expressed K07953: GTP-binding protein SAR1
8 Sobic.007G126200 mitosis protein dim1, putative, expressed K12859: TXNL4A, U5 snRNP protein, DIM1 family
9 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
10 Sobic.006G038400 YL1 nuclear protein C-terminal domain containing protein, expressed K11667: INO80C, INO80 complex subunit C
11 Sobic.001G129300 ribosomal L18p/L5e family protein, putative, expressed -
12 Sobic.004G316900 autophagy-related protein 12, putative, expressed K08336: ubiquitin-like protein ATG12
13 Sobic.009G252800 expressed protein -
14 Sobic.004G260400 expressed protein K07018: uncharacterized protein
15 Sobic.003G127400 BSD domain-containing protein, putative, expressed -
16 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
17 Sobic.004G250300 eukaryotic aspartyl protease domain containing protein, expressed -
18 Sobic.009G156300 pleckstrin homology domain-containing protein, putative, expressed -
19 Sobic.004G352900 expressed protein -
20 Sobic.001G543300 dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic002G123200 Sobic002G123200 Sobic009G199700 Sobic009G199700 Sobic002G123200--Sobic009G199700 Sobic007G079700 Sobic007G079700 Sobic002G123200--Sobic007G079700 Sobic001G136900 Sobic001G136900 Sobic002G123200--Sobic001G136900 Sobic002G204000 Sobic002G204000 Sobic002G123200--Sobic002G204000 Sobic002G117200 Sobic002G117200 Sobic002G123200--Sobic002G117200 Sobic004G186000 Sobic004G186000 Sobic002G123200--Sobic004G186000 Sobic008G128600 Sobic008G128600 Sobic002G123200--Sobic008G128600 Sobic007G126200 Sobic007G126200 Sobic002G123200--Sobic007G126200 Sobic003G250500 Sobic003G250500 Sobic002G123200--Sobic003G250500 Sobic003G127300 Sobic003G127300 Sobic009G199700--Sobic003G127300 Sobic007G203700 Sobic007G203700 Sobic009G199700--Sobic007G203700 Sobic002G298300 Sobic002G298300 Sobic009G199700--Sobic002G298300 Sobic002G368400 Sobic002G368400 Sobic009G199700--Sobic002G368400 Sobic009G199700--Sobic007G079700 Sobic009G246950 Sobic009G246950 Sobic009G199700--Sobic009G246950 Sobic004G060600 Sobic004G060600 Sobic009G199700--Sobic004G060600 Sobic009G199700--Sobic002G123200 Sobic002G078400 Sobic002G078400 Sobic009G199700--Sobic002G078400 Sobic009G114800 Sobic009G114800 Sobic007G079700--Sobic009G114800 Sobic006G054500 Sobic006G054500 Sobic007G079700--Sobic006G054500 Sobic006G262900 Sobic006G262900 Sobic007G079700--Sobic006G262900 Sobic002G273900 Sobic002G273900 Sobic007G079700--Sobic002G273900 Sobic007G079700--Sobic009G199700 Sobic003G116700 Sobic003G116700 Sobic007G079700--Sobic003G116700 Sobic004G301900 Sobic004G301900 Sobic007G079700--Sobic004G301900 Sobic004G253000 Sobic004G253000 Sobic007G079700--Sobic004G253000 Sobic004G272300 Sobic004G272300 Sobic007G079700--Sobic004G272300 Sobic001G439600 Sobic001G439600 Sobic001G136900--Sobic001G439600 Sobic002G256300 Sobic002G256300 Sobic001G136900--Sobic002G256300 Sobic004G316900 Sobic004G316900 Sobic001G136900--Sobic004G316900 Sobic010G083700 Sobic010G083700 Sobic001G136900--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G136900--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G136900--Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic001G136900--Sobic006G183000 Sobic001G136900--Sobic006G262900 Sobic001G129300 Sobic001G129300 Sobic001G136900--Sobic001G129300 Sobic001G038100 Sobic001G038100 Sobic002G204000--Sobic001G038100 Sobic002G204000--Sobic004G186000 Sobic002G204000--Sobic004G316900 Sobic004G019600 Sobic004G019600 Sobic002G204000--Sobic004G019600 Sobic001G329300 Sobic001G329300 Sobic002G204000--Sobic001G329300 Sobic010G193800 Sobic010G193800 Sobic002G204000--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic002G204000--Sobic004G226800 Sobic002G204000--Sobic001G136900 Sobic001G507400 Sobic001G507400 Sobic002G204000--Sobic001G507400 Sobic009G156300 Sobic009G156300 Sobic002G117200--Sobic009G156300 Sobic004G352900 Sobic004G352900 Sobic002G117200--Sobic004G352900 Sobic003G003000 Sobic003G003000 Sobic002G117200--Sobic003G003000 Sobic001G285000 Sobic001G285000 Sobic002G117200--Sobic001G285000 Sobic009G131100 Sobic009G131100 Sobic002G117200--Sobic009G131100 Sobic002G117200--Sobic002G123200 Sobic001G022600 Sobic001G022600 Sobic002G117200--Sobic001G022600 Sobic002G117200--Sobic004G060600 Sobic009G080200 Sobic009G080200 Sobic002G117200--Sobic009G080200 Sobic004G186000--Sobic002G204000 Sobic004G186000--Sobic001G038100 Sobic004G186000--Sobic008G128600 Sobic010G028300 Sobic010G028300 Sobic004G186000--Sobic010G028300 Sobic001G473600 Sobic001G473600 Sobic004G186000--Sobic001G473600 Sobic006G252300 Sobic006G252300 Sobic004G186000--Sobic006G252300 Sobic007G191700 Sobic007G191700 Sobic004G186000--Sobic007G191700 Sobic004G186000--Sobic001G507400 Sobic001G131800 Sobic001G131800 Sobic004G186000--Sobic001G131800 Sobic010G067700 Sobic010G067700 Sobic008G128600--Sobic010G067700 Sobic009G054700 Sobic009G054700 Sobic008G128600--Sobic009G054700 Sobic001G512900 Sobic001G512900 Sobic008G128600--Sobic001G512900 Sobic008G128600--Sobic003G250500 Sobic008G128600--Sobic001G131800 Sobic009G178600 Sobic009G178600 Sobic008G128600--Sobic009G178600 Sobic001G083600 Sobic001G083600 Sobic008G128600--Sobic001G083600 Sobic009G198100 Sobic009G198100 Sobic008G128600--Sobic009G198100 Sobic008G128600--Sobic006G252300 Sobic001G149700 Sobic001G149700 Sobic007G126200--Sobic001G149700 Sobic010G071200 Sobic010G071200 Sobic007G126200--Sobic010G071200 Sobic009G036900 Sobic009G036900 Sobic007G126200--Sobic009G036900 Sobic003G273100 Sobic003G273100 Sobic007G126200--Sobic003G273100 Sobic004G231400 Sobic004G231400 Sobic007G126200--Sobic004G231400 Sobic010G055500 Sobic010G055500 Sobic007G126200--Sobic010G055500 Sobic007G126200--Sobic003G116700 Sobic002G068300 Sobic002G068300 Sobic007G126200--Sobic002G068300 Sobic001G350501 Sobic001G350501 Sobic007G126200--Sobic001G350501 Sobic004G059000 Sobic004G059000 Sobic003G250500--Sobic004G059000 Sobic004G305600 Sobic004G305600 Sobic003G250500--Sobic004G305600 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic001G281600 Sobic001G281600 Sobic003G250500--Sobic001G281600 Sobic003G226500 Sobic003G226500 Sobic003G250500--Sobic003G226500 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300
Octagon: transcription factors


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