Gene annotation
Transcriptome id Sobic.004G316900.1
Synonym APG12B, APG12, Sb04g034790
Functional annotation autophagy-related protein 12, putative, expressed
UniProt C5XTK4
Pfam PF04110
Panther DB PTHR13385
NCBI CDD KOG3439; Protein conjugation factor involved in autophagy
KEGG Orthology K08336; ubiquitin-like protein ATG12
Gene Ontology GO:0005737; cytoplasm GO:0000045autophagosome assembly


Orthologs (automatic annotation)
TAIR AT3G13970 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os06g10340.1 : autophagy-related protein 12, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK01643
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
2 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
3 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
5 Sobic.003G316850 - -
6 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
7 Sobic.004G226800 expressed protein -
8 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
9 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
10 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
11 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
12 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
13 Sobic.007G167700 expressed protein -
14 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
15 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
16 Sobic.001G078500 expressed protein -
17 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
18 Sobic.006G183000 RING zinc finger protein, putative, expressed -
19 Sobic.001G543300 dehydrogenase, putative, expressed -
20 Sobic.009G149300 expressed protein -


Gene co-expression network
sample Sobic004G316900 Sobic004G316900 Sobic001G136900 Sobic001G136900 Sobic004G316900--Sobic001G136900 Sobic002G204000 Sobic002G204000 Sobic004G316900--Sobic002G204000 Sobic002G256300 Sobic002G256300 Sobic004G316900--Sobic002G256300 Sobic001G529000 Sobic001G529000 Sobic004G316900--Sobic001G529000 Sobic003G316850 Sobic003G316850 Sobic004G316900--Sobic003G316850 Sobic010G193800 Sobic010G193800 Sobic004G316900--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic004G316900--Sobic004G226800 Sobic007G203700 Sobic007G203700 Sobic004G316900--Sobic007G203700 Sobic001G439600 Sobic001G439600 Sobic004G316900--Sobic001G439600 Sobic001G136900--Sobic001G439600 Sobic001G136900--Sobic002G256300 Sobic001G136900--Sobic004G316900 Sobic010G083700 Sobic010G083700 Sobic001G136900--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G136900--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G136900--Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic001G136900--Sobic006G183000 Sobic006G262900 Sobic006G262900 Sobic001G136900--Sobic006G262900 Sobic001G129300 Sobic001G129300 Sobic001G136900--Sobic001G129300 Sobic001G038100 Sobic001G038100 Sobic002G204000--Sobic001G038100 Sobic004G186000 Sobic004G186000 Sobic002G204000--Sobic004G186000 Sobic002G204000--Sobic004G316900 Sobic004G019600 Sobic004G019600 Sobic002G204000--Sobic004G019600 Sobic001G329300 Sobic001G329300 Sobic002G204000--Sobic001G329300 Sobic002G204000--Sobic010G193800 Sobic002G204000--Sobic004G226800 Sobic002G204000--Sobic001G136900 Sobic001G507400 Sobic001G507400 Sobic002G204000--Sobic001G507400 Sobic009G246950 Sobic009G246950 Sobic002G256300--Sobic009G246950 Sobic002G256300--Sobic010G083700 Sobic004G104900 Sobic004G104900 Sobic002G256300--Sobic004G104900 Sobic010G168600 Sobic010G168600 Sobic002G256300--Sobic010G168600 Sobic002G256300--Sobic001G136900 Sobic002G256300--Sobic010G193800 Sobic002G256300--Sobic001G439600 Sobic002G256300--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic002G256300--Sobic009G171700 Sobic003G362400 Sobic003G362400 Sobic001G529000--Sobic003G362400 Sobic004G248800 Sobic004G248800 Sobic001G529000--Sobic004G248800 Sobic003G124800 Sobic003G124800 Sobic001G529000--Sobic003G124800 Sobic001G331900 Sobic001G331900 Sobic001G529000--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic001G529000--Sobic005G157200 Sobic007G163700 Sobic007G163700 Sobic001G529000--Sobic007G163700 Sobic010G039800 Sobic010G039800 Sobic001G529000--Sobic010G039800 Sobic001G529000--Sobic007G203700 Sobic004G300900 Sobic004G300900 Sobic001G529000--Sobic004G300900 Sobic003G316850--Sobic004G316900 Sobic001G501200 Sobic001G501200 Sobic003G316850--Sobic001G501200 Sobic004G339200 Sobic004G339200 Sobic003G316850--Sobic004G339200 Sobic003G316850--Sobic010G193800 Sobic003G316850--Sobic002G204000 Sobic009G256200 Sobic009G256200 Sobic003G316850--Sobic009G256200 Sobic010G051500 Sobic010G051500 Sobic003G316850--Sobic010G051500 Sobic010G221400 Sobic010G221400 Sobic003G316850--Sobic010G221400 Sobic003G043400 Sobic003G043400 Sobic003G316850--Sobic003G043400 Sobic003G420700 Sobic003G420700 Sobic010G193800--Sobic003G420700 Sobic004G356900 Sobic004G356900 Sobic010G193800--Sobic004G356900 Sobic010G193800--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic010G193800--Sobic007G203700 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic010G193800--Sobic009G246950 Sobic004G226800--Sobic004G356900 Sobic006G049700 Sobic006G049700 Sobic004G226800--Sobic006G049700 Sobic004G226800--Sobic002G256300 Sobic002G113900 Sobic002G113900 Sobic004G226800--Sobic002G113900 Sobic004G226800--Sobic010G193800 Sobic003G226500 Sobic003G226500 Sobic004G226800--Sobic003G226500 Sobic001G459100 Sobic001G459100 Sobic004G226800--Sobic001G459100 Sobic004G226800--Sobic002G204000 Sobic004G232800 Sobic004G232800 Sobic004G226800--Sobic004G232800 Sobic007G203700--Sobic009G246950 Sobic007G203700--Sobic001G529000 Sobic007G203700--Sobic010G193800 Sobic007G203700--Sobic006G263900 Sobic007G203700--Sobic002G256300 Sobic007G203700--Sobic004G300900 Sobic001G054200 Sobic001G054200 Sobic007G203700--Sobic001G054200 Sobic004G060600 Sobic004G060600 Sobic007G203700--Sobic004G060600 Sobic001G078500 Sobic001G078500 Sobic007G203700--Sobic001G078500 Sobic001G439600--Sobic003G124800 Sobic001G439600--Sobic002G129000 Sobic001G439600--Sobic010G083700 Sobic001G294900 Sobic001G294900 Sobic001G439600--Sobic001G294900 Sobic001G439600--Sobic001G136900 Sobic001G439600--Sobic001G054200 Sobic001G439600--Sobic010G168600 Sobic001G439600--Sobic002G256300 Sobic001G439600--Sobic001G529000
Octagon: transcription factors


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