Gene annotation
Transcriptome id Sobic.009G246950.1
Synonym -
Functional annotation -
UniProt A0A1Z5R404
Pfam PF14259
Panther DB PTHR13976
NCBI CDD KOG4211; Splicing factor hnRNP-F and related RNA-binding proteins
KEGG Orthology K12898; heterogeneous nuclear ribonucleoprotein F/H
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G66010 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os11g03890.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a044728 , Zm00025a022430 , Zm00025a036723
Brachypodium KQJ92874
Barley HORVU6Hr1G006480.10 , HORVU6Hr1G006480.11 , HORVU6Hr1G006480.2 , HORVU6Hr1G006480.3 , HORVU6Hr1G006480.1 , HORVU6Hr1G006480.6 , HORVU6Hr1G006480.4 , HORVU6Hr1G006480.5 , HORVU6Hr1G006480.8 , HORVU6Hr1G006480.9
Wheat TraesCS6B02G050200 , TraesCS6B02G050200 , TraesCS6D02G041300 , TraesCS6A02G035800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
3 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
4 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
5 Sobic.001G054200 green ripe-like, putative, expressed -
6 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
7 Sobic.009G171700 SAG20, putative, expressed -
8 Sobic.008G180900 YIF1B, putative, expressed -
9 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
10 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
11 Sobic.001G078500 expressed protein -
12 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
13 Sobic.006G002500 basic salivary proline-rich protein 2 precursor, putative, expressed -
14 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
15 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
16 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
17 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
18 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
19 Sobic.003G127400 BSD domain-containing protein, putative, expressed -
20 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -


Gene co-expression network
sample Sobic009G246950 Sobic009G246950 Sobic002G256300 Sobic002G256300 Sobic009G246950--Sobic002G256300 Sobic007G203700 Sobic007G203700 Sobic009G246950--Sobic007G203700 Sobic010G168600 Sobic010G168600 Sobic009G246950--Sobic010G168600 Sobic010G083700 Sobic010G083700 Sobic009G246950--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic009G246950--Sobic001G054200 Sobic007G186300 Sobic007G186300 Sobic009G246950--Sobic007G186300 Sobic009G171700 Sobic009G171700 Sobic009G246950--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G246950--Sobic008G180900 Sobic001G007200 Sobic001G007200 Sobic009G246950--Sobic001G007200 Sobic002G256300--Sobic009G246950 Sobic002G256300--Sobic010G083700 Sobic004G104900 Sobic004G104900 Sobic002G256300--Sobic004G104900 Sobic002G256300--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G256300--Sobic001G136900 Sobic010G193800 Sobic010G193800 Sobic002G256300--Sobic010G193800 Sobic001G439600 Sobic001G439600 Sobic002G256300--Sobic001G439600 Sobic006G263900 Sobic006G263900 Sobic002G256300--Sobic006G263900 Sobic002G256300--Sobic009G171700 Sobic007G203700--Sobic009G246950 Sobic001G529000 Sobic001G529000 Sobic007G203700--Sobic001G529000 Sobic007G203700--Sobic010G193800 Sobic007G203700--Sobic006G263900 Sobic007G203700--Sobic002G256300 Sobic004G300900 Sobic004G300900 Sobic007G203700--Sobic004G300900 Sobic007G203700--Sobic001G054200 Sobic004G060600 Sobic004G060600 Sobic007G203700--Sobic004G060600 Sobic001G078500 Sobic001G078500 Sobic007G203700--Sobic001G078500 Sobic010G168600--Sobic010G083700 Sobic010G168600--Sobic001G078500 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic010G168600--Sobic006G263900 Sobic003G007500 Sobic003G007500 Sobic010G168600--Sobic003G007500 Sobic010G168600--Sobic009G171700 Sobic010G168600--Sobic002G256300 Sobic010G168600--Sobic004G104900 Sobic010G083700--Sobic006G263900 Sobic010G083700--Sobic010G168600 Sobic010G083700--Sobic001G054200 Sobic010G083700--Sobic001G007200 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic010G083700--Sobic002G256300 Sobic010G083700--Sobic003G007500 Sobic001G054200--Sobic010G083700 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic001G054200--Sobic007G186300 Sobic001G054200--Sobic004G293700 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic006G232200 Sobic006G232200 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800 Sobic007G186300--Sobic003G007500 Sobic007G186300--Sobic001G054200 Sobic007G186300--Sobic003G115800 Sobic003G248600 Sobic003G248600 Sobic007G186300--Sobic003G248600 Sobic007G186300--Sobic001G007200 Sobic007G186300--Sobic009G246950 Sobic007G186300--Sobic010G083700 Sobic009G146100 Sobic009G146100 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200 Sobic009G171700--Sobic001G078500 Sobic009G171700--Sobic010G168600 Sobic009G171700--Sobic009G246950 Sobic009G171700--Sobic004G293700 Sobic009G171700--Sobic010G083700 Sobic009G171700--Sobic010G253800 Sobic009G171700--Sobic008G180900 Sobic009G171700--Sobic007G186300 Sobic009G171700--Sobic002G256300 Sobic008G180900--Sobic009G246950 Sobic008G180900--Sobic010G168600 Sobic008G180900--Sobic009G171700 Sobic009G193400 Sobic009G193400 Sobic008G180900--Sobic009G193400 Sobic008G180900--Sobic002G352700 Sobic001G478300 Sobic001G478300 Sobic008G180900--Sobic001G478300 Sobic008G180900--Sobic002G256300 Sobic008G180900--Sobic010G083700 Sobic004G203100 Sobic004G203100 Sobic008G180900--Sobic004G203100 Sobic001G007200--Sobic010G083700 Sobic001G415500 Sobic001G415500 Sobic001G007200--Sobic001G415500 Sobic001G007200--Sobic007G186300 Sobic001G007200--Sobic010G253800 Sobic004G086600 Sobic004G086600 Sobic001G007200--Sobic004G086600 Sobic001G073000 Sobic001G073000 Sobic001G007200--Sobic001G073000 Sobic001G007200--Sobic009G246950 Sobic004G141700 Sobic004G141700 Sobic001G007200--Sobic004G141700 Sobic001G007200--Sobic009G146100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.