Gene annotation
Transcriptome id Sobic.003G127400.1
Synonym Sb03g010780
Functional annotation BSD domain-containing protein, putative, expressed
UniProt C5XGM5
Pfam PF03909
Panther DB PTHR16019 PTHR16019:SF8
NCBI CDD KOG2690; Uncharacterized conserved protein, contains BSD domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03350 : BSD domain-containing protein
RAP-DB (Rice) LOC_Os01g16670.1 : BSD domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018050 , Zm00025a024091
Brachypodium -
Barley HORVU3Hr1G038420.1 , HORVU3Hr1G038420.2
Wheat TraesCS3B02G215900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
2 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
3 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
4 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.001G078500 expressed protein -
6 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
7 Sobic.008G142700 expressed protein -
8 Sobic.009G171700 SAG20, putative, expressed -
9 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
10 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
11 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
12 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
13 Sobic.004G059000 serine/threonine-protein kinase HT1, putative, expressed -
14 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
15 Sobic.008G180900 YIF1B, putative, expressed -
16 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
17 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
18 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
19 Sobic.002G346900 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
20 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A


Gene co-expression network
sample Sobic003G127400 Sobic003G127400 Sobic001G512900 Sobic001G512900 Sobic003G127400--Sobic001G512900 Sobic009G246950 Sobic009G246950 Sobic003G127400--Sobic009G246950 Sobic004G305600 Sobic004G305600 Sobic003G127400--Sobic004G305600 Sobic002G256300 Sobic002G256300 Sobic003G127400--Sobic002G256300 Sobic001G078500 Sobic001G078500 Sobic003G127400--Sobic001G078500 Sobic003G000800 Sobic003G000800 Sobic003G127400--Sobic003G000800 Sobic008G142700 Sobic008G142700 Sobic003G127400--Sobic008G142700 Sobic009G171700 Sobic009G171700 Sobic003G127400--Sobic009G171700 Sobic010G168600 Sobic010G168600 Sobic003G127400--Sobic010G168600 Sobic010G071200 Sobic010G071200 Sobic001G512900--Sobic010G071200 Sobic010G055500 Sobic010G055500 Sobic001G512900--Sobic010G055500 Sobic001G512900--Sobic008G142700 Sobic008G174300 Sobic008G174300 Sobic001G512900--Sobic008G174300 Sobic001G083600 Sobic001G083600 Sobic001G512900--Sobic001G083600 Sobic001G390500 Sobic001G390500 Sobic001G512900--Sobic001G390500 Sobic001G149700 Sobic001G149700 Sobic001G512900--Sobic001G149700 Sobic001G512900--Sobic003G127400 Sobic001G512900--Sobic009G246950 Sobic009G246950--Sobic002G256300 Sobic007G203700 Sobic007G203700 Sobic009G246950--Sobic007G203700 Sobic009G246950--Sobic010G168600 Sobic010G083700 Sobic010G083700 Sobic009G246950--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic009G246950--Sobic001G054200 Sobic007G186300 Sobic007G186300 Sobic009G246950--Sobic007G186300 Sobic009G246950--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G246950--Sobic008G180900 Sobic001G007200 Sobic001G007200 Sobic009G246950--Sobic001G007200 Sobic004G059000 Sobic004G059000 Sobic004G305600--Sobic004G059000 Sobic003G405700 Sobic003G405700 Sobic004G305600--Sobic003G405700 Sobic003G250500 Sobic003G250500 Sobic004G305600--Sobic003G250500 Sobic004G305600--Sobic002G256300 Sobic004G305600--Sobic003G127400 Sobic005G000800 Sobic005G000800 Sobic004G305600--Sobic005G000800 Sobic004G305600--Sobic009G246950 Sobic004G305600--Sobic001G512900 Sobic004G253000 Sobic004G253000 Sobic004G305600--Sobic004G253000 Sobic002G256300--Sobic009G246950 Sobic002G256300--Sobic010G083700 Sobic004G104900 Sobic004G104900 Sobic002G256300--Sobic004G104900 Sobic002G256300--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G256300--Sobic001G136900 Sobic010G193800 Sobic010G193800 Sobic002G256300--Sobic010G193800 Sobic001G439600 Sobic001G439600 Sobic002G256300--Sobic001G439600 Sobic006G263900 Sobic006G263900 Sobic002G256300--Sobic006G263900 Sobic002G256300--Sobic009G171700 Sobic001G078500--Sobic010G168600 Sobic001G078500--Sobic009G171700 Sobic003G007500 Sobic003G007500 Sobic001G078500--Sobic003G007500 Sobic001G078500--Sobic006G263900 Sobic004G339200 Sobic004G339200 Sobic001G078500--Sobic004G339200 Sobic001G078500--Sobic010G083700 Sobic001G078500--Sobic009G246950 Sobic001G078500--Sobic007G186300 Sobic002G400000 Sobic002G400000 Sobic001G078500--Sobic002G400000 Sobic003G000800--Sobic009G246950 Sobic001G031200 Sobic001G031200 Sobic003G000800--Sobic001G031200 Sobic003G000800--Sobic001G078500 Sobic003G000800--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G000800--Sobic001G512600 Sobic001G371300 Sobic001G371300 Sobic003G000800--Sobic001G371300 Sobic003G000800--Sobic010G083700 Sobic003G000800--Sobic001G149700 Sobic003G000800--Sobic007G186300 Sobic008G142700--Sobic010G071200 Sobic008G142700--Sobic001G512900 Sobic008G142700--Sobic010G055500 Sobic008G142700--Sobic001G149700 Sobic007G063200 Sobic007G063200 Sobic008G142700--Sobic007G063200 Sobic003G350600 Sobic003G350600 Sobic008G142700--Sobic003G350600 Sobic006G109300 Sobic006G109300 Sobic008G142700--Sobic006G109300 Sobic008G142700--Sobic009G246950 Sobic001G478300 Sobic001G478300 Sobic008G142700--Sobic001G478300 Sobic009G171700--Sobic001G078500 Sobic009G171700--Sobic010G168600 Sobic009G171700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic009G171700--Sobic004G293700 Sobic009G171700--Sobic010G083700 Sobic010G253800 Sobic010G253800 Sobic009G171700--Sobic010G253800 Sobic009G171700--Sobic008G180900 Sobic009G171700--Sobic007G186300 Sobic009G171700--Sobic002G256300 Sobic010G168600--Sobic010G083700 Sobic010G168600--Sobic001G078500 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic010G168600--Sobic006G263900 Sobic010G168600--Sobic003G007500 Sobic010G168600--Sobic009G171700 Sobic010G168600--Sobic002G256300 Sobic010G168600--Sobic004G104900
Octagon: transcription factors


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