Gene annotation
Transcriptome id Sobic.003G250500.3,Sobic.003G250500.2,Sobic.003G250500.4
Synonym ATU2AF35B, U2AF35B, Sb03g030670
Functional annotation splicing factor U2AF, putative, expressed
UniProt C5XG09
Pfam PF13893 PF00642
Panther DB PTHR12620 PTHR12620:SF15
NCBI CDD KOG2202; U2 snRNP splicing factor, small subunit, and related proteins
KEGG Orthology K12836; splicing factor U2AF 35 kDa subunit
Gene Ontology GO:0005634; nucleus GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G27650 : U2 snRNP auxiliary factor small subunit, putative
RAP-DB (Rice) LOC_Os09g31482.3,LOC_Os09g31482.1 : splicing factor U2AF, putative, expressed
MaizeGDB (Corn) Zm00025a036610 , Zm00025a044572 , Zm00025a016050 , Zm00025a025500
Brachypodium KQK04873 , KQK09105 , KQK09104 , PNT72552 , PNT72551 , PNT72550 , KQK04871 , KQK04872 , KQK04874
Barley HORVU1Hr1G087660.21 , HORVU1Hr1G087660.20 , HORVU1Hr1G087660.23 , HORVU1Hr1G087660.22 , HORVU1Hr1G087660.24 , HORVU5Hr1G073680.3 , HORVU5Hr1G073680.2 , HORVU5Hr1G073680.1 , HORVU5Hr1G073680.5 , HORVU5Hr1G073680.4 , HORVU1Hr1G087660.8 , HORVU1Hr1G087660.9 , HORVU1Hr1G087660.6 , HORVU1Hr1G087660.7 , HORVU1Hr1G087660.4 , HORVU1Hr1G087660.5 , HORVU1Hr1G087660.2 , HORVU1Hr1G087660.3 , HORVU1Hr1G087660.1 , HORVU1Hr1G087660.15 , HORVU1Hr1G087660.16 , HORVU1Hr1G087660.17 , HORVU1Hr1G087660.10 , HORVU1Hr1G087660.11 , HORVU1Hr1G087660.12 , HORVU1Hr1G087660.13 , HORVU1Hr1G087660.18 , HORVU1Hr1G087660.19
Wheat TraesCS1D02G405300 , TraesCS1D02G405300 , TraesCS1D02G405300 , TraesCS1B02G425600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G059000 serine/threonine-protein kinase HT1, putative, expressed -
2 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
3 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
4 Sobic.008G062000 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
5 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
6 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
7 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A
8 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
9 Sobic.001G119300 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
10 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
11 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
12 Sobic.008G128600 miro, putative, expressed K07953: GTP-binding protein SAR1
13 Sobic.009G198100 expressed protein -
14 Sobic.010G146600 cyclin-dependent kinase F-1, putative, expressed -
15 Sobic.009G157200 OsFBL23 - F-box domain and LRR containing protein, expressed K13463: coronatine-insensitive protein 1
16 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
17 Sobic.001G291100 tetraspanin family protein, putative, expressed -
18 Sobic.002G110700 uncharacterized ACR, YggU family COG1872 containing protein, expressed K09131: uncharacterized protein
19 Sobic.007G205000 zinc finger family protein, putative, expressed -
20 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -


Gene co-expression network
sample Sobic003G250500 Sobic003G250500 Sobic004G059000 Sobic004G059000 Sobic003G250500--Sobic004G059000 Sobic004G305600 Sobic004G305600 Sobic003G250500--Sobic004G305600 Sobic004G301900 Sobic004G301900 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic001G281600 Sobic001G281600 Sobic003G250500--Sobic001G281600 Sobic003G226500 Sobic003G226500 Sobic003G250500--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300 Sobic004G059000--Sobic004G305600 Sobic001G061700 Sobic001G061700 Sobic004G059000--Sobic001G061700 Sobic004G059000--Sobic003G250500 Sobic007G019800 Sobic007G019800 Sobic004G059000--Sobic007G019800 Sobic004G059000--Sobic004G253000 Sobic001G131800 Sobic001G131800 Sobic004G059000--Sobic001G131800 Sobic002G256300 Sobic002G256300 Sobic004G059000--Sobic002G256300 Sobic002G365100 Sobic002G365100 Sobic004G059000--Sobic002G365100 Sobic003G405700 Sobic003G405700 Sobic004G059000--Sobic003G405700 Sobic004G305600--Sobic004G059000 Sobic004G305600--Sobic003G405700 Sobic004G305600--Sobic003G250500 Sobic004G305600--Sobic002G256300 Sobic003G127400 Sobic003G127400 Sobic004G305600--Sobic003G127400 Sobic005G000800 Sobic005G000800 Sobic004G305600--Sobic005G000800 Sobic009G246950 Sobic009G246950 Sobic004G305600--Sobic009G246950 Sobic001G512900 Sobic001G512900 Sobic004G305600--Sobic001G512900 Sobic004G305600--Sobic004G253000 Sobic010G090900 Sobic010G090900 Sobic004G301900--Sobic010G090900 Sobic004G301900--Sobic003G250500 Sobic002G113900 Sobic002G113900 Sobic004G301900--Sobic002G113900 Sobic004G301900--Sobic004G059000 Sobic004G301900--Sobic004G253000 Sobic004G301900--Sobic001G512600 Sobic004G301900--Sobic007G019800 Sobic001G051200 Sobic001G051200 Sobic004G301900--Sobic001G051200 Sobic004G356900 Sobic004G356900 Sobic004G301900--Sobic004G356900 Sobic006G273200 Sobic006G273200 Sobic008G062000--Sobic006G273200 Sobic004G205600 Sobic004G205600 Sobic008G062000--Sobic004G205600 Sobic008G062000--Sobic001G131800 Sobic008G062000--Sobic003G250500 Sobic010G033400 Sobic010G033400 Sobic008G062000--Sobic010G033400 Sobic008G067600 Sobic008G067600 Sobic008G062000--Sobic008G067600 Sobic008G174300 Sobic008G174300 Sobic008G062000--Sobic008G174300 Sobic007G205800 Sobic007G205800 Sobic008G062000--Sobic007G205800 Sobic007G132400 Sobic007G132400 Sobic008G062000--Sobic007G132400 Sobic010G279700 Sobic010G279700 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic003G401100 Sobic003G401100 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic003G226500--Sobic003G250500 Sobic004G104900 Sobic004G104900 Sobic003G226500--Sobic004G104900 Sobic003G007500 Sobic003G007500 Sobic003G226500--Sobic003G007500 Sobic003G350600 Sobic003G350600 Sobic003G226500--Sobic003G350600 Sobic001G136900 Sobic001G136900 Sobic003G226500--Sobic001G136900 Sobic010G083700 Sobic010G083700 Sobic003G226500--Sobic010G083700 Sobic004G226800 Sobic004G226800 Sobic003G226500--Sobic004G226800 Sobic003G226500--Sobic001G512600 Sobic001G054200 Sobic001G054200 Sobic003G226500--Sobic001G054200 Sobic003G050600 Sobic003G050600 Sobic004G253000--Sobic003G050600 Sobic004G253000--Sobic010G083700 Sobic001G098200 Sobic001G098200 Sobic004G253000--Sobic001G098200 Sobic003G015900 Sobic003G015900 Sobic004G253000--Sobic003G015900 Sobic004G253000--Sobic003G250500 Sobic004G253000--Sobic004G059000 Sobic004G253000--Sobic001G051200 Sobic004G253000--Sobic009G246950 Sobic003G000800 Sobic003G000800 Sobic004G253000--Sobic003G000800 Sobic001G512600--Sobic003G350600 Sobic001G467000 Sobic001G467000 Sobic001G512600--Sobic001G467000 Sobic008G142700 Sobic008G142700 Sobic001G512600--Sobic008G142700 Sobic001G512600--Sobic003G250500 Sobic004G150400 Sobic004G150400 Sobic001G512600--Sobic004G150400 Sobic001G512600--Sobic003G226500 Sobic001G512600--Sobic004G301900 Sobic001G512600--Sobic003G000800 Sobic001G372000 Sobic001G372000 Sobic001G512600--Sobic001G372000 Sobic007G104800 Sobic007G104800 Sobic001G119300--Sobic007G104800 Sobic007G200600 Sobic007G200600 Sobic001G119300--Sobic007G200600 Sobic007G026300 Sobic007G026300 Sobic001G119300--Sobic007G026300 Sobic002G350300 Sobic002G350300 Sobic001G119300--Sobic002G350300 Sobic006G088100 Sobic006G088100 Sobic001G119300--Sobic006G088100 Sobic009G205200 Sobic009G205200 Sobic001G119300--Sobic009G205200 Sobic002G200100 Sobic002G200100 Sobic001G119300--Sobic002G200100 Sobic001G371200 Sobic001G371200 Sobic001G119300--Sobic001G371200 Sobic002G090800 Sobic002G090800 Sobic001G119300--Sobic002G090800
Octagon: transcription factors


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