Gene annotation
Transcriptome id Sobic.004G253000.1
Synonym Sb04g029240
Functional annotation AGAP000425-PA, putative, expressed
UniProt C5XZF3
Pfam PF08555
Panther DB PTHR13282 PTHR13282:SF6
NCBI CDD KOG3410; Conserved alpha-helical protein
KEGG Orthology K13120; protein FAM32A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16810 : -
RAP-DB (Rice) LOC_Os02g49530.1 : AGAP000425-PA, putative, expressed
MaizeGDB (Corn) Zm00025a038894 , Zm00025a018685
Brachypodium KQK01509
Barley HORVU6Hr1G072370.1
Wheat TraesCS6B02G318300 , TraesCS6D02G270300
Populus PNT37180


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cDNA sequences
Sobic.004G253000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G050600 expressed protein -
2 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
3 Sobic.001G098200 magnesium-dependent phosphatase 1, putative, expressed K17619: magnesium-dependent phosphatase 1
4 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
5 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
6 Sobic.004G059000 serine/threonine-protein kinase HT1, putative, expressed -
7 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
8 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
9 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
10 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
11 Sobic.002G273900 expressed protein -
12 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
13 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
14 Sobic.007G019800 expressed protein -
15 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
16 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
18 Sobic.006G254700 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
19 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
20 Sobic.007G079700 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic004G253000 Sobic004G253000 Sobic003G050600 Sobic003G050600 Sobic004G253000--Sobic003G050600 Sobic010G083700 Sobic010G083700 Sobic004G253000--Sobic010G083700 Sobic001G098200 Sobic001G098200 Sobic004G253000--Sobic001G098200 Sobic003G015900 Sobic003G015900 Sobic004G253000--Sobic003G015900 Sobic003G250500 Sobic003G250500 Sobic004G253000--Sobic003G250500 Sobic004G059000 Sobic004G059000 Sobic004G253000--Sobic004G059000 Sobic001G051200 Sobic001G051200 Sobic004G253000--Sobic001G051200 Sobic009G246950 Sobic009G246950 Sobic004G253000--Sobic009G246950 Sobic003G000800 Sobic003G000800 Sobic004G253000--Sobic003G000800 Sobic003G050600--Sobic004G253000 Sobic002G256300 Sobic002G256300 Sobic003G050600--Sobic002G256300 Sobic002G273900 Sobic002G273900 Sobic003G050600--Sobic002G273900 Sobic003G050600--Sobic010G083700 Sobic004G001400 Sobic004G001400 Sobic003G050600--Sobic004G001400 Sobic001G364600 Sobic001G364600 Sobic003G050600--Sobic001G364600 Sobic003G050600--Sobic001G098200 Sobic003G050600--Sobic003G015900 Sobic003G050600--Sobic004G059000 Sobic006G263900 Sobic006G263900 Sobic010G083700--Sobic006G263900 Sobic010G168600 Sobic010G168600 Sobic010G083700--Sobic010G168600 Sobic001G054200 Sobic001G054200 Sobic010G083700--Sobic001G054200 Sobic001G007200 Sobic001G007200 Sobic010G083700--Sobic001G007200 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic010G083700--Sobic002G256300 Sobic003G007500 Sobic003G007500 Sobic010G083700--Sobic003G007500 Sobic004G234900 Sobic004G234900 Sobic001G098200--Sobic004G234900 Sobic006G225600 Sobic006G225600 Sobic001G098200--Sobic006G225600 Sobic001G098200--Sobic004G253000 Sobic002G251700 Sobic002G251700 Sobic001G098200--Sobic002G251700 Sobic010G090900 Sobic010G090900 Sobic001G098200--Sobic010G090900 Sobic001G098200--Sobic003G050600 Sobic004G301900 Sobic004G301900 Sobic001G098200--Sobic004G301900 Sobic001G098200--Sobic001G051200 Sobic003G044200 Sobic003G044200 Sobic001G098200--Sobic003G044200 Sobic003G015900--Sobic001G051200 Sobic003G015900--Sobic010G083700 Sobic002G352600 Sobic002G352600 Sobic003G015900--Sobic002G352600 Sobic001G047400 Sobic001G047400 Sobic003G015900--Sobic001G047400 Sobic009G165800 Sobic009G165800 Sobic003G015900--Sobic009G165800 Sobic004G086600 Sobic004G086600 Sobic003G015900--Sobic004G086600 Sobic003G015900--Sobic004G253000 Sobic010G000900 Sobic010G000900 Sobic003G015900--Sobic010G000900 Sobic003G015900--Sobic009G246950 Sobic003G250500--Sobic004G059000 Sobic004G305600 Sobic004G305600 Sobic003G250500--Sobic004G305600 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic001G281600 Sobic001G281600 Sobic003G250500--Sobic001G281600 Sobic003G226500 Sobic003G226500 Sobic003G250500--Sobic003G226500 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300 Sobic004G059000--Sobic004G305600 Sobic001G061700 Sobic001G061700 Sobic004G059000--Sobic001G061700 Sobic004G059000--Sobic003G250500 Sobic007G019800 Sobic007G019800 Sobic004G059000--Sobic007G019800 Sobic004G059000--Sobic004G253000 Sobic001G131800 Sobic001G131800 Sobic004G059000--Sobic001G131800 Sobic004G059000--Sobic002G256300 Sobic002G365100 Sobic002G365100 Sobic004G059000--Sobic002G365100 Sobic003G405700 Sobic003G405700 Sobic004G059000--Sobic003G405700 Sobic001G051200--Sobic003G015900 Sobic001G051200--Sobic003G007500 Sobic003G261400 Sobic003G261400 Sobic001G051200--Sobic003G261400 Sobic001G051200--Sobic001G047400 Sobic001G051200--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic001G051200--Sobic007G168600 Sobic010G058500 Sobic010G058500 Sobic001G051200--Sobic010G058500 Sobic002G400000 Sobic002G400000 Sobic001G051200--Sobic002G400000 Sobic001G051200--Sobic010G168600 Sobic009G246950--Sobic002G256300 Sobic007G203700 Sobic007G203700 Sobic009G246950--Sobic007G203700 Sobic009G246950--Sobic010G168600 Sobic009G246950--Sobic010G083700 Sobic009G246950--Sobic001G054200 Sobic007G186300 Sobic007G186300 Sobic009G246950--Sobic007G186300 Sobic009G171700 Sobic009G171700 Sobic009G246950--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G246950--Sobic008G180900 Sobic009G246950--Sobic001G007200 Sobic003G000800--Sobic009G246950 Sobic001G031200 Sobic001G031200 Sobic003G000800--Sobic001G031200 Sobic001G078500 Sobic001G078500 Sobic003G000800--Sobic001G078500 Sobic003G000800--Sobic004G253000 Sobic003G000800--Sobic001G512600 Sobic001G371300 Sobic001G371300 Sobic003G000800--Sobic001G371300 Sobic003G000800--Sobic010G083700 Sobic001G149700 Sobic001G149700 Sobic003G000800--Sobic001G149700 Sobic003G000800--Sobic007G186300
Octagon: transcription factors


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