Gene annotation
Transcriptome id Sobic.003G050600.1,Sobic.003G050600.2
Synonym Sb03g004410
Functional annotation expressed protein
UniProt A0A1W0VVQ8 , C5XNE9
Pfam PF13259
Panther DB PTHR33373 PTHR33373:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15770 : -
RAP-DB (Rice) LOC_Os01g07750.1 : expressed protein
MaizeGDB (Corn) Zm00025a035725
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G050600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A
2 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.002G273900 expressed protein -
4 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
5 Sobic.004G001400 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
6 Sobic.001G364600 transmembrane protein 85, putative, expressed -
7 Sobic.001G098200 magnesium-dependent phosphatase 1, putative, expressed K17619: magnesium-dependent phosphatase 1
8 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
9 Sobic.004G059000 serine/threonine-protein kinase HT1, putative, expressed -
10 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
11 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
12 Sobic.007G166100 no apical meristem protein, putative, expressed -
13 Sobic.007G019800 expressed protein -
14 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
15 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
16 Sobic.004G226800 expressed protein -
17 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
18 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
19 Sobic.002G113900 lipid binding protein, putative, expressed -
20 Sobic.001G105500 heat shock protein DnaJ, putative, expressed -


Gene co-expression network
sample Sobic003G050600 Sobic003G050600 Sobic004G253000 Sobic004G253000 Sobic003G050600--Sobic004G253000 Sobic002G256300 Sobic002G256300 Sobic003G050600--Sobic002G256300 Sobic002G273900 Sobic002G273900 Sobic003G050600--Sobic002G273900 Sobic010G083700 Sobic010G083700 Sobic003G050600--Sobic010G083700 Sobic004G001400 Sobic004G001400 Sobic003G050600--Sobic004G001400 Sobic001G364600 Sobic001G364600 Sobic003G050600--Sobic001G364600 Sobic001G098200 Sobic001G098200 Sobic003G050600--Sobic001G098200 Sobic003G015900 Sobic003G015900 Sobic003G050600--Sobic003G015900 Sobic004G059000 Sobic004G059000 Sobic003G050600--Sobic004G059000 Sobic004G253000--Sobic003G050600 Sobic004G253000--Sobic010G083700 Sobic004G253000--Sobic001G098200 Sobic004G253000--Sobic003G015900 Sobic003G250500 Sobic003G250500 Sobic004G253000--Sobic003G250500 Sobic004G253000--Sobic004G059000 Sobic001G051200 Sobic001G051200 Sobic004G253000--Sobic001G051200 Sobic009G246950 Sobic009G246950 Sobic004G253000--Sobic009G246950 Sobic003G000800 Sobic003G000800 Sobic004G253000--Sobic003G000800 Sobic002G256300--Sobic009G246950 Sobic002G256300--Sobic010G083700 Sobic004G104900 Sobic004G104900 Sobic002G256300--Sobic004G104900 Sobic010G168600 Sobic010G168600 Sobic002G256300--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G256300--Sobic001G136900 Sobic010G193800 Sobic010G193800 Sobic002G256300--Sobic010G193800 Sobic001G439600 Sobic001G439600 Sobic002G256300--Sobic001G439600 Sobic006G263900 Sobic006G263900 Sobic002G256300--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic002G256300--Sobic009G171700 Sobic002G273900--Sobic004G059000 Sobic002G273900--Sobic004G253000 Sobic002G273900--Sobic003G050600 Sobic007G079700 Sobic007G079700 Sobic002G273900--Sobic007G079700 Sobic006G054500 Sobic006G054500 Sobic002G273900--Sobic006G054500 Sobic002G273900--Sobic001G364600 Sobic007G097900 Sobic007G097900 Sobic002G273900--Sobic007G097900 Sobic002G273900--Sobic003G250500 Sobic008G128600 Sobic008G128600 Sobic002G273900--Sobic008G128600 Sobic010G083700--Sobic006G263900 Sobic010G083700--Sobic010G168600 Sobic001G054200 Sobic001G054200 Sobic010G083700--Sobic001G054200 Sobic001G007200 Sobic001G007200 Sobic010G083700--Sobic001G007200 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic010G083700--Sobic002G256300 Sobic003G007500 Sobic003G007500 Sobic010G083700--Sobic003G007500 Sobic004G001400--Sobic003G050600 Sobic004G060600 Sobic004G060600 Sobic004G001400--Sobic004G060600 Sobic007G166100 Sobic007G166100 Sobic004G001400--Sobic007G166100 Sobic007G203700 Sobic007G203700 Sobic004G001400--Sobic007G203700 Sobic001G395400 Sobic001G395400 Sobic004G001400--Sobic001G395400 Sobic004G226800 Sobic004G226800 Sobic004G001400--Sobic004G226800 Sobic004G001400--Sobic002G256300 Sobic006G049700 Sobic006G049700 Sobic004G001400--Sobic006G049700 Sobic004G001400--Sobic001G364600 Sobic010G277100 Sobic010G277100 Sobic001G364600--Sobic010G277100 Sobic007G168600 Sobic007G168600 Sobic001G364600--Sobic007G168600 Sobic001G364600--Sobic004G060600 Sobic003G077900 Sobic003G077900 Sobic001G364600--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic001G364600--Sobic002G400000 Sobic001G364600--Sobic003G050600 Sobic003G127300 Sobic003G127300 Sobic001G364600--Sobic003G127300 Sobic009G004600 Sobic009G004600 Sobic001G364600--Sobic009G004600 Sobic001G314500 Sobic001G314500 Sobic001G364600--Sobic001G314500 Sobic004G234900 Sobic004G234900 Sobic001G098200--Sobic004G234900 Sobic006G225600 Sobic006G225600 Sobic001G098200--Sobic006G225600 Sobic001G098200--Sobic004G253000 Sobic002G251700 Sobic002G251700 Sobic001G098200--Sobic002G251700 Sobic010G090900 Sobic010G090900 Sobic001G098200--Sobic010G090900 Sobic001G098200--Sobic003G050600 Sobic004G301900 Sobic004G301900 Sobic001G098200--Sobic004G301900 Sobic001G098200--Sobic001G051200 Sobic003G044200 Sobic003G044200 Sobic001G098200--Sobic003G044200 Sobic003G015900--Sobic001G051200 Sobic003G015900--Sobic010G083700 Sobic002G352600 Sobic002G352600 Sobic003G015900--Sobic002G352600 Sobic001G047400 Sobic001G047400 Sobic003G015900--Sobic001G047400 Sobic009G165800 Sobic009G165800 Sobic003G015900--Sobic009G165800 Sobic004G086600 Sobic004G086600 Sobic003G015900--Sobic004G086600 Sobic003G015900--Sobic004G253000 Sobic010G000900 Sobic010G000900 Sobic003G015900--Sobic010G000900 Sobic003G015900--Sobic009G246950 Sobic004G305600 Sobic004G305600 Sobic004G059000--Sobic004G305600 Sobic001G061700 Sobic001G061700 Sobic004G059000--Sobic001G061700 Sobic004G059000--Sobic003G250500 Sobic007G019800 Sobic007G019800 Sobic004G059000--Sobic007G019800 Sobic004G059000--Sobic004G253000 Sobic001G131800 Sobic001G131800 Sobic004G059000--Sobic001G131800 Sobic004G059000--Sobic002G256300 Sobic002G365100 Sobic002G365100 Sobic004G059000--Sobic002G365100 Sobic003G405700 Sobic003G405700 Sobic004G059000--Sobic003G405700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.