Gene annotation
Transcriptome id Sobic.004G001400.1
Synonym ASK2, Sb04g000330, SKP1B
Functional annotation SKP1-like protein 1B, putative, expressed
UniProt C5XRH0
Pfam PF03931 PF01466
Panther DB PTHR11165
NCBI CDD KOG1724; SCF ubiquitin ligase, Skp1 component
KEGG Orthology K03094; SKP1, S-phase kinase-associated protein 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT5G42190 : E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
RAP-DB (Rice) LOC_Os09g36830.1 : Skp1 family, dimerisation domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015845 , Zm00025a018627 , Zm00025a015847 , Zm00025a015846 , Zm00025a015852 , Zm00025a029772 , Zm00025a015913 , Zm00025a015850 , Zm00025a028498 , Zm00025a028499
Brachypodium KQJ99541 , KQJ92734 , KQJ88553
Barley HORVU3Hr1G089860.1 , HORVU3Hr1G089860.2 , HORVU3Hr1G089860.3 , HORVU3Hr1G089860.4 , HORVU3Hr1G089860.5 , HORVU3Hr1G089860.6 , HORVU5Hr1G110790.1 , HORVU5Hr1G110760.1 , HORVU5Hr1G110760.2 , HORVU6Hr1G000640.13 , HORVU5Hr1G110820.3 , HORVU5Hr1G110820.2 , HORVU2Hr1G020940.1 , HORVU1Hr1G030620.1 , HORVU7Hr1G099840.1 , HORVU2Hr1G115400.1 , HORVU2Hr1G115400.3 , HORVU2Hr1G115400.2 , HORVU5Hr1G110820.1 , HORVU7Hr1G099860.1 , HORVU7Hr1G099860.2 , HORVU2Hr1G115410.2 , HORVU2Hr1G115410.1 , HORVU6Hr1G000660.1 , HORVU6Hr1G000640.14 , HORVU6Hr1G000640.15 , HORVU6Hr1G000640.16 , HORVU6Hr1G000640.17 , HORVU5Hr1G110830.1 , HORVU5Hr1G110830.2 , HORVU5Hr1G110830.3 , HORVU6Hr1G000640.18 , HORVU6Hr1G000640.19 , HORVU0Hr1G007820.1 , HORVU2Hr1G115420.1 , HORVU0Hr1G007820.2 , HORVU5Hr1G090360.1 , HORVU7Hr1G002220.5 , HORVU7Hr1G002220.4 , HORVU7Hr1G002220.3 , HORVU7Hr1G002220.2 , HORVU7Hr1G002220.1 , HORVU5Hr1G110840.1 , HORVU5Hr1G110800.1 , HORVU7Hr1G099950.1 , HORVU6Hr1G000640.21 , HORVU6Hr1G000640.20 , HORVU6Hr1G000640.23 , HORVU6Hr1G000640.22 , HORVU6Hr1G000640.24 , HORVU7Hr1G099790.3 , HORVU7Hr1G099790.2 , HORVU7Hr1G099790.1 , HORVU5Hr1G110810.2 , HORVU5Hr1G110810.3 , HORVU6Hr1G000660.2 , HORVU5Hr1G110810.1
Wheat TraesCS4A02G472600 , TraesCS6A02G000300 , TraesCS6D02G001600 , TraesCS5D02G105800 , TraesCS5B02G331700 , TraesCS7A02G020600 , TraesCS7D02G016900 , TraesCS5D02G337200 , TraesCS6B02G008800 , TraesCS6B02G053400 , TraesCS6A02G016900 , TraesCS6D02G002600 , TraesCS6B02G004300 , TraesCS3B02G308600 , TraesCS3B02G406500 , TraesCS5A02G331300 , TraesCS3A02G374400 , TraesCS4A02G379700 , TraesCS5B02G099600
Populus PNT38515 , PNT38514


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cDNA sequences
Sobic.004G001400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G050600 expressed protein -
2 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
3 Sobic.007G166100 no apical meristem protein, putative, expressed -
4 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
5 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
6 Sobic.004G226800 expressed protein -
7 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.006G049700 SAM domain family protein, expressed -
9 Sobic.001G364600 transmembrane protein 85, putative, expressed -
10 Sobic.009G174900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
11 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
12 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
13 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.002G110700 uncharacterized ACR, YggU family COG1872 containing protein, expressed K09131: uncharacterized protein
15 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
16 Sobic.002G035900 glycine-rich protein, putative, expressed K13344: peroxin-13
17 Sobic.009G199700 expressed protein -
18 Sobic.003G071000 SLT1 protein, putative, expressed -
19 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
20 Sobic.004G316900 autophagy-related protein 12, putative, expressed K08336: ubiquitin-like protein ATG12


Gene co-expression network
sample Sobic004G001400 Sobic004G001400 Sobic003G050600 Sobic003G050600 Sobic004G001400--Sobic003G050600 Sobic004G060600 Sobic004G060600 Sobic004G001400--Sobic004G060600 Sobic007G166100 Sobic007G166100 Sobic004G001400--Sobic007G166100 Sobic007G203700 Sobic007G203700 Sobic004G001400--Sobic007G203700 Sobic001G395400 Sobic001G395400 Sobic004G001400--Sobic001G395400 Sobic004G226800 Sobic004G226800 Sobic004G001400--Sobic004G226800 Sobic002G256300 Sobic002G256300 Sobic004G001400--Sobic002G256300 Sobic006G049700 Sobic006G049700 Sobic004G001400--Sobic006G049700 Sobic001G364600 Sobic001G364600 Sobic004G001400--Sobic001G364600 Sobic004G253000 Sobic004G253000 Sobic003G050600--Sobic004G253000 Sobic003G050600--Sobic002G256300 Sobic002G273900 Sobic002G273900 Sobic003G050600--Sobic002G273900 Sobic010G083700 Sobic010G083700 Sobic003G050600--Sobic010G083700 Sobic003G050600--Sobic004G001400 Sobic003G050600--Sobic001G364600 Sobic001G098200 Sobic001G098200 Sobic003G050600--Sobic001G098200 Sobic003G015900 Sobic003G015900 Sobic003G050600--Sobic003G015900 Sobic004G059000 Sobic004G059000 Sobic003G050600--Sobic004G059000 Sobic003G077900 Sobic003G077900 Sobic004G060600--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic004G060600--Sobic002G400000 Sobic009G131100 Sobic009G131100 Sobic004G060600--Sobic009G131100 Sobic001G428100 Sobic001G428100 Sobic004G060600--Sobic001G428100 Sobic004G060600--Sobic007G203700 Sobic009G198500 Sobic009G198500 Sobic004G060600--Sobic009G198500 Sobic007G168600 Sobic007G168600 Sobic004G060600--Sobic007G168600 Sobic003G117300 Sobic003G117300 Sobic004G060600--Sobic003G117300 Sobic004G060600--Sobic001G364600 Sobic007G166100--Sobic001G395400 Sobic010G000900 Sobic010G000900 Sobic007G166100--Sobic010G000900 Sobic004G356900 Sobic004G356900 Sobic007G166100--Sobic004G356900 Sobic007G166100--Sobic002G400000 Sobic004G104900 Sobic004G104900 Sobic007G166100--Sobic004G104900 Sobic009G004600 Sobic009G004600 Sobic007G166100--Sobic009G004600 Sobic001G085100 Sobic001G085100 Sobic007G166100--Sobic001G085100 Sobic010G027600 Sobic010G027600 Sobic007G166100--Sobic010G027600 Sobic004G066200 Sobic004G066200 Sobic007G166100--Sobic004G066200 Sobic009G246950 Sobic009G246950 Sobic007G203700--Sobic009G246950 Sobic001G529000 Sobic001G529000 Sobic007G203700--Sobic001G529000 Sobic010G193800 Sobic010G193800 Sobic007G203700--Sobic010G193800 Sobic006G263900 Sobic006G263900 Sobic007G203700--Sobic006G263900 Sobic007G203700--Sobic002G256300 Sobic004G300900 Sobic004G300900 Sobic007G203700--Sobic004G300900 Sobic001G054200 Sobic001G054200 Sobic007G203700--Sobic001G054200 Sobic007G203700--Sobic004G060600 Sobic001G078500 Sobic001G078500 Sobic007G203700--Sobic001G078500 Sobic001G395400--Sobic007G166100 Sobic001G395400--Sobic002G400000 Sobic001G395400--Sobic006G263900 Sobic003G416400 Sobic003G416400 Sobic001G395400--Sobic003G416400 Sobic010G168600 Sobic010G168600 Sobic001G395400--Sobic010G168600 Sobic001G395400--Sobic003G077900 Sobic001G395400--Sobic010G000900 Sobic001G057800 Sobic001G057800 Sobic001G395400--Sobic001G057800 Sobic009G165800 Sobic009G165800 Sobic001G395400--Sobic009G165800 Sobic004G226800--Sobic004G356900 Sobic004G226800--Sobic006G049700 Sobic004G226800--Sobic002G256300 Sobic002G113900 Sobic002G113900 Sobic004G226800--Sobic002G113900 Sobic004G226800--Sobic010G193800 Sobic003G226500 Sobic003G226500 Sobic004G226800--Sobic003G226500 Sobic001G459100 Sobic001G459100 Sobic004G226800--Sobic001G459100 Sobic002G204000 Sobic002G204000 Sobic004G226800--Sobic002G204000 Sobic004G232800 Sobic004G232800 Sobic004G226800--Sobic004G232800 Sobic002G256300--Sobic009G246950 Sobic002G256300--Sobic010G083700 Sobic002G256300--Sobic004G104900 Sobic002G256300--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G256300--Sobic001G136900 Sobic002G256300--Sobic010G193800 Sobic001G439600 Sobic001G439600 Sobic002G256300--Sobic001G439600 Sobic002G256300--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic002G256300--Sobic009G171700 Sobic009G222500 Sobic009G222500 Sobic006G049700--Sobic009G222500 Sobic007G166400 Sobic007G166400 Sobic006G049700--Sobic007G166400 Sobic003G264200 Sobic003G264200 Sobic006G049700--Sobic003G264200 Sobic006G101700 Sobic006G101700 Sobic006G049700--Sobic006G101700 Sobic007G167900 Sobic007G167900 Sobic006G049700--Sobic007G167900 Sobic006G049700--Sobic004G226800 Sobic006G049700--Sobic010G027600 Sobic006G049700--Sobic002G113900 Sobic006G049700--Sobic004G356900 Sobic010G277100 Sobic010G277100 Sobic001G364600--Sobic010G277100 Sobic001G364600--Sobic007G168600 Sobic001G364600--Sobic004G060600 Sobic001G364600--Sobic003G077900 Sobic001G364600--Sobic002G400000 Sobic001G364600--Sobic003G050600 Sobic003G127300 Sobic003G127300 Sobic001G364600--Sobic003G127300 Sobic001G364600--Sobic009G004600 Sobic001G314500 Sobic001G314500 Sobic001G364600--Sobic001G314500
Octagon: transcription factors


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