Gene annotation
Transcriptome id Sobic.002G035900.2,Sobic.002G035900.1
Synonym APM2, Sb02g003110, PEX13
Functional annotation glycine-rich protein, putative, expressed
UniProt A0A1B6Q921 , A0A1B6Q915
Pfam -
Panther DB PTHR19332 PTHR19332:SF2
NCBI CDD -
KEGG Orthology K13344; peroxin-13
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07560 : peroxin 13
RAP-DB (Rice) LOC_Os07g05810.1 : glycine-rich protein, putative, expressed
MaizeGDB (Corn) Zm00025a008473 , Zm00025a016159
Brachypodium KQK21063 , PNT77152
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G035900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
2 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
4 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
6 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
7 Sobic.009G122100 tetratricopeptide repeat containing protein, putative, expressed K17969: FIS1, TTC11, mitochondrial fission 1 protein
8 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
9 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
10 Sobic.003G369500 NPL4, putative, expressed K14015: NPLOC4, nuclear protein localization protein 4 homolog
11 Sobic.004G001400 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
12 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
13 Sobic.003G104700 Rer1 protein, putative, expressed -
14 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
15 Sobic.002G261900 arabinogalactan protein, putative, expressed -
16 Sobic.009G023801 - -
17 Sobic.003G117300 LSM domain containing protein, expressed K12623: U6 snRNA-associated Sm-like protein LSm4
18 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
19 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
20 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family


Gene co-expression network
sample Sobic002G035900 Sobic002G035900 Sobic004G060600 Sobic004G060600 Sobic002G035900--Sobic004G060600 Sobic001G433400 Sobic001G433400 Sobic002G035900--Sobic001G433400 Sobic007G096700 Sobic007G096700 Sobic002G035900--Sobic007G096700 Sobic002G400000 Sobic002G400000 Sobic002G035900--Sobic002G400000 Sobic001G501200 Sobic001G501200 Sobic002G035900--Sobic001G501200 Sobic007G168600 Sobic007G168600 Sobic002G035900--Sobic007G168600 Sobic009G122100 Sobic009G122100 Sobic002G035900--Sobic009G122100 Sobic003G077900 Sobic003G077900 Sobic002G035900--Sobic003G077900 Sobic003G367451 Sobic003G367451 Sobic002G035900--Sobic003G367451 Sobic004G060600--Sobic003G077900 Sobic004G060600--Sobic002G400000 Sobic009G131100 Sobic009G131100 Sobic004G060600--Sobic009G131100 Sobic001G428100 Sobic001G428100 Sobic004G060600--Sobic001G428100 Sobic007G203700 Sobic007G203700 Sobic004G060600--Sobic007G203700 Sobic009G198500 Sobic009G198500 Sobic004G060600--Sobic009G198500 Sobic004G060600--Sobic007G168600 Sobic003G117300 Sobic003G117300 Sobic004G060600--Sobic003G117300 Sobic001G364600 Sobic001G364600 Sobic004G060600--Sobic001G364600 Sobic002G045300 Sobic002G045300 Sobic001G433400--Sobic002G045300 Sobic001G433400--Sobic002G400000 Sobic001G433400--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic001G433400--Sobic009G146100 Sobic009G135600 Sobic009G135600 Sobic001G433400--Sobic009G135600 Sobic003G253000 Sobic003G253000 Sobic001G433400--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic001G433400--Sobic003G220600 Sobic004G327300 Sobic004G327300 Sobic001G433400--Sobic004G327300 Sobic007G186300 Sobic007G186300 Sobic001G433400--Sobic007G186300 Sobic007G096700--Sobic009G198500 Sobic007G096700--Sobic004G327300 Sobic007G096700--Sobic009G122100 Sobic007G096700--Sobic001G501200 Sobic001G005900 Sobic001G005900 Sobic007G096700--Sobic001G005900 Sobic007G096700--Sobic002G400000 Sobic004G130900 Sobic004G130900 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic004G300900 Sobic004G300900 Sobic007G096700--Sobic004G300900 Sobic002G400000--Sobic007G168600 Sobic002G400000--Sobic003G077900 Sobic002G400000--Sobic009G198500 Sobic002G400000--Sobic004G130900 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic010G000900 Sobic010G000900 Sobic002G400000--Sobic010G000900 Sobic001G501200--Sobic009G198500 Sobic001G501200--Sobic007G096700 Sobic001G501200--Sobic001G005900 Sobic001G501200--Sobic007G168600 Sobic001G501200--Sobic001G428100 Sobic003G124800 Sobic003G124800 Sobic001G501200--Sobic003G124800 Sobic001G502200 Sobic001G502200 Sobic001G501200--Sobic001G502200 Sobic001G501200--Sobic004G300900 Sobic004G130100 Sobic004G130100 Sobic001G501200--Sobic004G130100 Sobic007G168600--Sobic002G400000 Sobic007G168600--Sobic009G198500 Sobic004G086600 Sobic004G086600 Sobic007G168600--Sobic004G086600 Sobic007G168600--Sobic001G502200 Sobic007G168600--Sobic003G077900 Sobic010G205300 Sobic010G205300 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic001G461900 Sobic001G461900 Sobic007G168600--Sobic001G461900 Sobic001G314500 Sobic001G314500 Sobic007G168600--Sobic001G314500 Sobic009G122100--Sobic007G096700 Sobic002G257400 Sobic002G257400 Sobic009G122100--Sobic002G257400 Sobic009G122100--Sobic001G461900 Sobic008G111400 Sobic008G111400 Sobic009G122100--Sobic008G111400 Sobic010G266300 Sobic010G266300 Sobic009G122100--Sobic010G266300 Sobic001G224400 Sobic001G224400 Sobic009G122100--Sobic001G224400 Sobic002G222900 Sobic002G222900 Sobic009G122100--Sobic002G222900 Sobic007G152400 Sobic007G152400 Sobic009G122100--Sobic007G152400 Sobic001G058100 Sobic001G058100 Sobic009G122100--Sobic001G058100 Sobic003G077900--Sobic002G400000 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic010G188100 Sobic010G188100 Sobic003G077900--Sobic010G188100 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic003G077900--Sobic004G130900 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic003G367451--Sobic004G130900 Sobic003G367451--Sobic003G253000 Sobic003G367451--Sobic003G220600
Octagon: transcription factors


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