Gene annotation
Transcriptome id Sobic.003G104700.2
Synonym Sb03g008770, ATRER1A
Functional annotation Rer1 protein, putative, expressed
UniProt A0A1W0VWR2
Pfam PF03248
Panther DB PTHR10743
NCBI CDD KOG1688; Golgi proteins involved in ER retention (RER)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT4G39220 : Rer1 family protein
RAP-DB (Rice) LOC_Os01g01640.1 : Rer1 protein, putative, expressed
MaizeGDB (Corn) Zm00025a041758 , Zm00025a018425 , Zm00025a035407 , Zm00025a023831
Brachypodium KQK02287
Barley HORVU3Hr1G000490.4 , HORVU3Hr1G000490.5 , HORVU3Hr1G000490.2 , HORVU3Hr1G000490.3 , HORVU3Hr1G000490.1 , HORVU7Hr1G095770.1 , HORVU7Hr1G095770.3 , HORVU7Hr1G095770.4
Wheat TraesCSU02G055900 , TraesCSU02G055900 , TraesCS3A02G002300 , TraesCS7A02G410200 , TraesCS7B02G309600 , TraesCS7A02G410200 , TraesCS3B02G001900 , TraesCS7D02G403400
Populus -


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cDNA sequences
Sobic.003G104700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
2 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
3 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
4 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
5 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
6 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -
7 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
8 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
9 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
10 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
11 Sobic.003G330500 peptidase, T1 family, putative, expressed -
12 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
13 Sobic.010G026700 cornichon protein, putative, expressed -
14 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
15 Sobic.004G284500 ORM1, putative, expressed -
16 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
17 Sobic.003G023000 CID11, putative, expressed -
18 Sobic.002G257400 peptidase, T1 family, putative, expressed -
19 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
20 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -


Gene co-expression network
sample Sobic003G104700 Sobic003G104700 Sobic002G428200 Sobic002G428200 Sobic003G104700--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic003G104700--Sobic006G252200 Sobic007G076300 Sobic007G076300 Sobic003G104700--Sobic007G076300 Sobic002G078400 Sobic002G078400 Sobic003G104700--Sobic002G078400 Sobic003G367451 Sobic003G367451 Sobic003G104700--Sobic003G367451 Sobic007G091000 Sobic007G091000 Sobic003G104700--Sobic007G091000 Sobic001G236300 Sobic001G236300 Sobic003G104700--Sobic001G236300 Sobic004G224900 Sobic004G224900 Sobic003G104700--Sobic004G224900 Sobic004G335000 Sobic004G335000 Sobic003G104700--Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic007G176200 Sobic007G176200 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic002G428200--Sobic008G137600 Sobic001G010700 Sobic001G010700 Sobic002G428200--Sobic001G010700 Sobic002G428200--Sobic003G104700 Sobic006G252200--Sobic007G176200 Sobic001G458700 Sobic001G458700 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic003G330500 Sobic003G330500 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic007G076300--Sobic004G224900 Sobic007G076300--Sobic004G138800 Sobic002G257400 Sobic002G257400 Sobic007G076300--Sobic002G257400 Sobic007G076300--Sobic003G330500 Sobic001G505500 Sobic001G505500 Sobic007G076300--Sobic001G505500 Sobic003G129800 Sobic003G129800 Sobic007G076300--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic007G076300--Sobic004G310300 Sobic005G050500 Sobic005G050500 Sobic007G076300--Sobic005G050500 Sobic010G154700 Sobic010G154700 Sobic007G076300--Sobic010G154700 Sobic004G300900 Sobic004G300900 Sobic002G078400--Sobic004G300900 Sobic010G065400 Sobic010G065400 Sobic002G078400--Sobic010G065400 Sobic003G362400 Sobic003G362400 Sobic002G078400--Sobic003G362400 Sobic002G078400--Sobic007G091000 Sobic008G132800 Sobic008G132800 Sobic002G078400--Sobic008G132800 Sobic001G445800 Sobic001G445800 Sobic002G078400--Sobic001G445800 Sobic001G331900 Sobic001G331900 Sobic002G078400--Sobic001G331900 Sobic009G198500 Sobic009G198500 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic001G433400 Sobic001G433400 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G253000 Sobic003G253000 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic007G091000--Sobic002G078400 Sobic007G091000--Sobic003G362400 Sobic001G128400 Sobic001G128400 Sobic007G091000--Sobic001G128400 Sobic005G111100 Sobic005G111100 Sobic007G091000--Sobic005G111100 Sobic007G152400 Sobic007G152400 Sobic007G091000--Sobic007G152400 Sobic003G305100 Sobic003G305100 Sobic007G091000--Sobic003G305100 Sobic003G368500 Sobic003G368500 Sobic007G091000--Sobic003G368500 Sobic001G025600 Sobic001G025600 Sobic007G091000--Sobic001G025600 Sobic003G277000 Sobic003G277000 Sobic007G091000--Sobic003G277000 Sobic001G236300--Sobic003G367451 Sobic001G236300--Sobic004G224900 Sobic001G236300--Sobic007G114200 Sobic001G236300--Sobic004G272800 Sobic001G058100 Sobic001G058100 Sobic001G236300--Sobic001G058100 Sobic001G132100 Sobic001G132100 Sobic001G236300--Sobic001G132100 Sobic001G236300--Sobic006G252200 Sobic001G236300--Sobic004G335000 Sobic007G045600 Sobic007G045600 Sobic001G236300--Sobic007G045600 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G224900--Sobic004G138800 Sobic004G224900--Sobic007G076300 Sobic001G481700 Sobic001G481700 Sobic004G224900--Sobic001G481700 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic004G224900--Sobic001G236300 Sobic004G335000--Sobic002G428200 Sobic004G335000--Sobic007G176200 Sobic004G335000--Sobic001G010700 Sobic004G335000--Sobic002G257400 Sobic004G335000--Sobic006G252200 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic004G335000--Sobic001G058100 Sobic004G335000--Sobic007G045600
Octagon: transcription factors


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