Gene annotation
Transcriptome id Sobic.010G026700.1
Synonym Sb10g002450
Functional annotation cornichon protein, putative, expressed
UniProt C5Z3F8
Pfam PF03311
Panther DB PTHR12290 PTHR12290:SF18
NCBI CDD KOG2729; ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G12390 : Cornichon family protein
RAP-DB (Rice) LOC_Os06g04500.1 : cornichon protein, putative, expressed
MaizeGDB (Corn) Zm00025a041432
Brachypodium KQK19960 , KQK19959 , KQK19958
Barley -
Wheat TraesCS7A02G075500
Populus -


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cDNA sequences
Sobic.010G026700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G104700 Rer1 protein, putative, expressed -
2 Sobic.001G214200 lysM domain containing protein, putative, expressed -
3 Sobic.002G261900 arabinogalactan protein, putative, expressed -
4 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
5 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
6 Sobic.003G023000 CID11, putative, expressed -
7 Sobic.003G141700 50S ribosomal protein L15, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
8 Sobic.007G139700 DCN1, putative, expressed K17824: DCN1-like protein 4/5
9 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
10 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
11 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
12 Sobic.001G122500 SNARE associated Golgi protein, putative, expressed -
13 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
14 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
15 Sobic.002G083266 - K00326: cytochrome-b5 reductase
16 Sobic.001G415000 expressed protein -
17 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
18 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
19 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
20 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13


Gene co-expression network
sample Sobic010G026700 Sobic010G026700 Sobic003G104700 Sobic003G104700 Sobic010G026700--Sobic003G104700 Sobic001G214200 Sobic001G214200 Sobic010G026700--Sobic001G214200 Sobic002G261900 Sobic002G261900 Sobic010G026700--Sobic002G261900 Sobic009G135600 Sobic009G135600 Sobic010G026700--Sobic009G135600 Sobic001G311100 Sobic001G311100 Sobic010G026700--Sobic001G311100 Sobic003G023000 Sobic003G023000 Sobic010G026700--Sobic003G023000 Sobic003G141700 Sobic003G141700 Sobic010G026700--Sobic003G141700 Sobic007G139700 Sobic007G139700 Sobic010G026700--Sobic007G139700 Sobic003G349300 Sobic003G349300 Sobic010G026700--Sobic003G349300 Sobic002G428200 Sobic002G428200 Sobic003G104700--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic003G104700--Sobic006G252200 Sobic007G076300 Sobic007G076300 Sobic003G104700--Sobic007G076300 Sobic002G078400 Sobic002G078400 Sobic003G104700--Sobic002G078400 Sobic003G367451 Sobic003G367451 Sobic003G104700--Sobic003G367451 Sobic007G091000 Sobic007G091000 Sobic003G104700--Sobic007G091000 Sobic001G236300 Sobic001G236300 Sobic003G104700--Sobic001G236300 Sobic004G224900 Sobic004G224900 Sobic003G104700--Sobic004G224900 Sobic004G335000 Sobic004G335000 Sobic003G104700--Sobic004G335000 Sobic001G214200--Sobic010G026700 Sobic001G122500 Sobic001G122500 Sobic001G214200--Sobic001G122500 Sobic001G050400 Sobic001G050400 Sobic001G214200--Sobic001G050400 Sobic003G023500 Sobic003G023500 Sobic001G214200--Sobic003G023500 Sobic002G395600 Sobic002G395600 Sobic001G214200--Sobic002G395600 Sobic001G408100 Sobic001G408100 Sobic001G214200--Sobic001G408100 Sobic010G017000 Sobic010G017000 Sobic001G214200--Sobic010G017000 Sobic002G214900 Sobic002G214900 Sobic001G214200--Sobic002G214900 Sobic010G235200 Sobic010G235200 Sobic001G214200--Sobic010G235200 Sobic006G062800 Sobic006G062800 Sobic002G261900--Sobic006G062800 Sobic007G059900 Sobic007G059900 Sobic002G261900--Sobic007G059900 Sobic002G083266 Sobic002G083266 Sobic002G261900--Sobic002G083266 Sobic002G261900--Sobic001G311100 Sobic001G066700 Sobic001G066700 Sobic002G261900--Sobic001G066700 Sobic003G043400 Sobic003G043400 Sobic002G261900--Sobic003G043400 Sobic010G204300 Sobic010G204300 Sobic002G261900--Sobic010G204300 Sobic009G070200 Sobic009G070200 Sobic002G261900--Sobic009G070200 Sobic004G026200 Sobic004G026200 Sobic002G261900--Sobic004G026200 Sobic001G461900 Sobic001G461900 Sobic009G135600--Sobic001G461900 Sobic009G135600--Sobic003G349300 Sobic009G146100 Sobic009G146100 Sobic009G135600--Sobic009G146100 Sobic001G433400 Sobic001G433400 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic002G400000 Sobic002G400000 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic001G054200 Sobic001G054200 Sobic009G135600--Sobic001G054200 Sobic001G311100--Sobic002G261900 Sobic010G094600 Sobic010G094600 Sobic001G311100--Sobic010G094600 Sobic009G160200 Sobic009G160200 Sobic001G311100--Sobic009G160200 Sobic001G311100--Sobic003G043400 Sobic001G311100--Sobic010G026700 Sobic001G283500 Sobic001G283500 Sobic001G311100--Sobic001G283500 Sobic010G188100 Sobic010G188100 Sobic001G311100--Sobic010G188100 Sobic001G311100--Sobic010G017000 Sobic001G311100--Sobic002G083266 Sobic003G023000--Sobic003G367451 Sobic003G023000--Sobic003G104700 Sobic003G023000--Sobic002G083266 Sobic006G182100 Sobic006G182100 Sobic003G023000--Sobic006G182100 Sobic001G224400 Sobic001G224400 Sobic003G023000--Sobic001G224400 Sobic003G023000--Sobic002G214900 Sobic001G403700 Sobic001G403700 Sobic003G023000--Sobic001G403700 Sobic003G023000--Sobic010G026700 Sobic009G001400 Sobic009G001400 Sobic003G023000--Sobic009G001400 Sobic003G141700--Sobic001G224400 Sobic001G350600 Sobic001G350600 Sobic003G141700--Sobic001G350600 Sobic004G170400 Sobic004G170400 Sobic003G141700--Sobic004G170400 Sobic004G339300 Sobic004G339300 Sobic003G141700--Sobic004G339300 Sobic001G074700 Sobic001G074700 Sobic003G141700--Sobic001G074700 Sobic009G119900 Sobic009G119900 Sobic003G141700--Sobic009G119900 Sobic003G185500 Sobic003G185500 Sobic003G141700--Sobic003G185500 Sobic001G342200 Sobic001G342200 Sobic003G141700--Sobic001G342200 Sobic007G114200 Sobic007G114200 Sobic003G141700--Sobic007G114200 Sobic007G139700--Sobic003G349300 Sobic007G139700--Sobic010G188100 Sobic007G139700--Sobic002G385900 Sobic007G139700--Sobic010G026700 Sobic001G313500 Sobic001G313500 Sobic007G139700--Sobic001G313500 Sobic003G201900 Sobic003G201900 Sobic007G139700--Sobic003G201900 Sobic006G281800 Sobic006G281800 Sobic007G139700--Sobic006G281800 Sobic001G328200 Sobic001G328200 Sobic007G139700--Sobic001G328200 Sobic002G166900 Sobic002G166900 Sobic007G139700--Sobic002G166900 Sobic010G205300 Sobic010G205300 Sobic003G349300--Sobic010G205300 Sobic003G349300--Sobic001G294900 Sobic003G349300--Sobic009G135600 Sobic003G349300--Sobic001G388200 Sobic004G181900 Sobic004G181900 Sobic003G349300--Sobic004G181900 Sobic009G192000 Sobic009G192000 Sobic003G349300--Sobic009G192000 Sobic001G283200 Sobic001G283200 Sobic003G349300--Sobic001G283200 Sobic003G261400 Sobic003G261400 Sobic003G349300--Sobic003G261400 Sobic007G168600 Sobic007G168600 Sobic003G349300--Sobic007G168600
Octagon: transcription factors


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