Gene annotation
Transcriptome id Sobic.001G311100.1
Synonym Sb01g030340
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5WTK1
Pfam PF00627 PF00240
Panther DB PTHR10677 PTHR10677:SF26
NCBI CDD KOG0010; Ubiquitin-like protein
KEGG Orthology K04523; UBQLN, ubiquilin
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G17200 : ubiquitin family protein
RAP-DB (Rice) LOC_Os10g39620.2 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a053365 , Zm00025a052269 , Zm00025a003201 , Zm00025a000441
Brachypodium KQK23813
Barley HORVU1Hr1G052260.12 , HORVU1Hr1G052260.13 , HORVU1Hr1G052260.11 , HORVU1Hr1G052260.14 , HORVU1Hr1G052260.15 , HORVU4Hr1G082050.6 , HORVU4Hr1G082050.5 , HORVU4Hr1G082050.4 , HORVU4Hr1G082050.3 , HORVU4Hr1G082050.2 , HORVU4Hr1G082050.1 , HORVU4Hr1G082050.9 , HORVU4Hr1G082050.8 , HORVU4Hr1G082050.15 , HORVU4Hr1G082050.13 , HORVU4Hr1G082050.12 , HORVU4Hr1G082050.11 , HORVU4Hr1G082050.10 , HORVU4Hr1G082050.14 , HORVU1Hr1G052260.2 , HORVU1Hr1G052260.3
Wheat TraesCS4B02G325900 , TraesCS4B02G325900 , TraesCS4B02G325900 , TraesCS1D02G206500 , TraesCS1D02G206500 , TraesCS1D02G206500 , TraesCS1D02G206500 , TraesCS4D02G322800 , TraesCS1A02G203000 , TraesCS1A02G203000 , TraesCS1A02G203000 , TraesCS1B02G217000 , TraesCS1B02G217000 , TraesCS1B02G217000 , TraesCS4D02G322800 , TraesCS4D02G322800
Populus -


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cDNA sequences
Sobic.001G311100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G261900 arabinogalactan protein, putative, expressed -
2 Sobic.010G094600 zinc finger, C3HC4 type, domain containing protein, expressed -
3 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
4 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
5 Sobic.010G026700 cornichon protein, putative, expressed -
6 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
7 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
8 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
9 Sobic.002G083266 - K00326: cytochrome-b5 reductase
10 Sobic.001G415000 expressed protein -
11 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
12 Sobic.001G398950 - -
13 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
14 Sobic.007G059900 DUF292 domain containing protein, expressed -
15 Sobic.004G026200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.002G134400 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
17 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
18 Sobic.002G378300 ADP-ribosylation factor, putative, expressed K07952: ADP-ribosylation factor related protein 1
19 Sobic.002G395600 bZIP transcription factor domain containing protein, expressed -
20 Sobic.002G348600 zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic001G311100 Sobic001G311100 Sobic002G261900 Sobic002G261900 Sobic001G311100--Sobic002G261900 Sobic010G094600 Sobic010G094600 Sobic001G311100--Sobic010G094600 Sobic009G160200 Sobic009G160200 Sobic001G311100--Sobic009G160200 Sobic003G043400 Sobic003G043400 Sobic001G311100--Sobic003G043400 Sobic010G026700 Sobic010G026700 Sobic001G311100--Sobic010G026700 Sobic001G283500 Sobic001G283500 Sobic001G311100--Sobic001G283500 Sobic010G188100 Sobic010G188100 Sobic001G311100--Sobic010G188100 Sobic010G017000 Sobic010G017000 Sobic001G311100--Sobic010G017000 Sobic002G083266 Sobic002G083266 Sobic001G311100--Sobic002G083266 Sobic006G062800 Sobic006G062800 Sobic002G261900--Sobic006G062800 Sobic007G059900 Sobic007G059900 Sobic002G261900--Sobic007G059900 Sobic002G261900--Sobic002G083266 Sobic002G261900--Sobic001G311100 Sobic001G066700 Sobic001G066700 Sobic002G261900--Sobic001G066700 Sobic002G261900--Sobic003G043400 Sobic010G204300 Sobic010G204300 Sobic002G261900--Sobic010G204300 Sobic009G070200 Sobic009G070200 Sobic002G261900--Sobic009G070200 Sobic004G026200 Sobic004G026200 Sobic002G261900--Sobic004G026200 Sobic010G094600--Sobic001G311100 Sobic010G094600--Sobic009G160200 Sobic003G052400 Sobic003G052400 Sobic010G094600--Sobic003G052400 Sobic001G516100 Sobic001G516100 Sobic010G094600--Sobic001G516100 Sobic007G006600 Sobic007G006600 Sobic010G094600--Sobic007G006600 Sobic010G094600--Sobic001G283500 Sobic002G348600 Sobic002G348600 Sobic010G094600--Sobic002G348600 Sobic010G094600--Sobic002G261900 Sobic010G094600--Sobic002G083266 Sobic009G160200--Sobic001G283500 Sobic006G222400 Sobic006G222400 Sobic009G160200--Sobic006G222400 Sobic009G160200--Sobic001G311100 Sobic009G160200--Sobic010G017000 Sobic003G217100 Sobic003G217100 Sobic009G160200--Sobic003G217100 Sobic009G160200--Sobic002G261900 Sobic009G160200--Sobic010G094600 Sobic009G160200--Sobic003G043400 Sobic009G160200--Sobic003G052400 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic002G428200 Sobic002G428200 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic007G152400 Sobic007G152400 Sobic003G043400--Sobic007G152400 Sobic003G043400--Sobic006G222400 Sobic003G104700 Sobic003G104700 Sobic010G026700--Sobic003G104700 Sobic001G214200 Sobic001G214200 Sobic010G026700--Sobic001G214200 Sobic010G026700--Sobic002G261900 Sobic009G135600 Sobic009G135600 Sobic010G026700--Sobic009G135600 Sobic010G026700--Sobic001G311100 Sobic003G023000 Sobic003G023000 Sobic010G026700--Sobic003G023000 Sobic003G141700 Sobic003G141700 Sobic010G026700--Sobic003G141700 Sobic007G139700 Sobic007G139700 Sobic010G026700--Sobic007G139700 Sobic003G349300 Sobic003G349300 Sobic010G026700--Sobic003G349300 Sobic008G016900 Sobic008G016900 Sobic001G283500--Sobic008G016900 Sobic007G195701 Sobic007G195701 Sobic001G283500--Sobic007G195701 Sobic001G403700 Sobic001G403700 Sobic001G283500--Sobic001G403700 Sobic003G115800 Sobic003G115800 Sobic001G283500--Sobic003G115800 Sobic001G283500--Sobic009G160200 Sobic001G283500--Sobic010G204300 Sobic002G296300 Sobic002G296300 Sobic001G283500--Sobic002G296300 Sobic010G062800 Sobic010G062800 Sobic001G283500--Sobic010G062800 Sobic001G283500--Sobic010G188100 Sobic001G220400 Sobic001G220400 Sobic010G188100--Sobic001G220400 Sobic009G219900 Sobic009G219900 Sobic010G188100--Sobic009G219900 Sobic010G101500 Sobic010G101500 Sobic010G188100--Sobic010G101500 Sobic003G367451 Sobic003G367451 Sobic010G188100--Sobic003G367451 Sobic003G077900 Sobic003G077900 Sobic010G188100--Sobic003G077900 Sobic009G001400 Sobic009G001400 Sobic010G188100--Sobic009G001400 Sobic002G400000 Sobic002G400000 Sobic010G188100--Sobic002G400000 Sobic002G166900 Sobic002G166900 Sobic010G188100--Sobic002G166900 Sobic010G188100--Sobic001G283500 Sobic010G017000--Sobic006G222400 Sobic006G217700 Sobic006G217700 Sobic010G017000--Sobic006G217700 Sobic003G021200 Sobic003G021200 Sobic010G017000--Sobic003G021200 Sobic010G017000--Sobic003G052400 Sobic010G017000--Sobic009G160200 Sobic003G038600 Sobic003G038600 Sobic010G017000--Sobic003G038600 Sobic010G017000--Sobic007G059900 Sobic010G017000--Sobic001G283500 Sobic009G008600 Sobic009G008600 Sobic010G017000--Sobic009G008600 Sobic002G083266--Sobic003G367451 Sobic006G264300 Sobic006G264300 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic009G111600 Sobic009G111600 Sobic002G083266--Sobic009G111600 Sobic001G224400 Sobic001G224400 Sobic002G083266--Sobic001G224400 Sobic002G083266--Sobic006G062800 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic004G272800 Sobic004G272800 Sobic002G083266--Sobic004G272800
Octagon: transcription factors


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