Gene annotation
Transcriptome id Sobic.001G398950.1
Synonym -
Functional annotation -
UniProt A0A1Z5S9X8
Pfam PF13639 PF00628
Panther DB -
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G05670 : RING/U-box protein
RAP-DB (Rice) LOC_Os03g19020.1 : PHD-finger family protein, expressed
MaizeGDB (Corn) Zm00025a052602
Brachypodium -
Barley HORVU4Hr1G054580.4 , HORVU4Hr1G054580.2 , HORVU4Hr1G054580.1 , HORVU2Hr1G015670.1 , HORVU2Hr1G015670.2 , HORVU4Hr1G054580.3
Wheat TraesCS2D02G092600 , TraesCS2B02G108800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
2 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
3 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
4 Sobic.002G296300 expressed protein -
5 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
6 Sobic.002G261900 arabinogalactan protein, putative, expressed -
7 Sobic.007G059900 DUF292 domain containing protein, expressed -
8 Sobic.003G061900 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
9 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
10 Sobic.001G501000 transcription factor Dp, putative, expressed K04683: transcription factor Dp-1
11 Sobic.002G378300 ADP-ribosylation factor, putative, expressed K07952: ADP-ribosylation factor related protein 1
12 Sobic.001G298300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@autophagy-related protein 3, putative, expressed K08343: ubiquitin-like-conjugating enzyme ATG3
13 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
14 Sobic.010G094600 zinc finger, C3HC4 type, domain containing protein, expressed -
15 Sobic.004G349800 expressed protein -
16 Sobic.001G158500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LSD1 zinc finger domain containing protein, expressed -
17 Sobic.002G083266 - K00326: cytochrome-b5 reductase
18 Sobic.009G171700 SAG20, putative, expressed -
19 Sobic.001G472500 yippee zinc-binding protein, putative, expressed -
20 Sobic.001G103200 DNA binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G398950 Sobic001G398950 Sobic001G311100 Sobic001G311100 Sobic001G398950--Sobic001G311100 Sobic004G339200 Sobic004G339200 Sobic001G398950--Sobic004G339200 Sobic001G085900 Sobic001G085900 Sobic001G398950--Sobic001G085900 Sobic002G296300 Sobic002G296300 Sobic001G398950--Sobic002G296300 Sobic003G416400 Sobic003G416400 Sobic001G398950--Sobic003G416400 Sobic002G261900 Sobic002G261900 Sobic001G398950--Sobic002G261900 Sobic007G059900 Sobic007G059900 Sobic001G398950--Sobic007G059900 Sobic003G061900 Sobic003G061900 Sobic001G398950--Sobic003G061900 Sobic001G057800 Sobic001G057800 Sobic001G398950--Sobic001G057800 Sobic001G311100--Sobic002G261900 Sobic010G094600 Sobic010G094600 Sobic001G311100--Sobic010G094600 Sobic009G160200 Sobic009G160200 Sobic001G311100--Sobic009G160200 Sobic003G043400 Sobic003G043400 Sobic001G311100--Sobic003G043400 Sobic010G026700 Sobic010G026700 Sobic001G311100--Sobic010G026700 Sobic001G283500 Sobic001G283500 Sobic001G311100--Sobic001G283500 Sobic010G188100 Sobic010G188100 Sobic001G311100--Sobic010G188100 Sobic010G017000 Sobic010G017000 Sobic001G311100--Sobic010G017000 Sobic002G083266 Sobic002G083266 Sobic001G311100--Sobic002G083266 Sobic001G078500 Sobic001G078500 Sobic004G339200--Sobic001G078500 Sobic002G400000 Sobic002G400000 Sobic004G339200--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic004G339200--Sobic010G168600 Sobic009G171700 Sobic009G171700 Sobic004G339200--Sobic009G171700 Sobic003G007500 Sobic003G007500 Sobic004G339200--Sobic003G007500 Sobic009G198500 Sobic009G198500 Sobic004G339200--Sobic009G198500 Sobic001G433400 Sobic001G433400 Sobic004G339200--Sobic001G433400 Sobic001G439600 Sobic001G439600 Sobic004G339200--Sobic001G439600 Sobic007G186300 Sobic007G186300 Sobic004G339200--Sobic007G186300 Sobic004G039300 Sobic004G039300 Sobic001G085900--Sobic004G039300 Sobic001G313500 Sobic001G313500 Sobic001G085900--Sobic001G313500 Sobic001G158500 Sobic001G158500 Sobic001G085900--Sobic001G158500 Sobic001G085900--Sobic002G083266 Sobic002G385900 Sobic002G385900 Sobic001G085900--Sobic002G385900 Sobic010G129600 Sobic010G129600 Sobic001G085900--Sobic010G129600 Sobic001G298300 Sobic001G298300 Sobic001G085900--Sobic001G298300 Sobic007G006700 Sobic007G006700 Sobic001G085900--Sobic007G006700 Sobic001G085900--Sobic003G061900 Sobic005G176000 Sobic005G176000 Sobic002G296300--Sobic005G176000 Sobic008G097401 Sobic008G097401 Sobic002G296300--Sobic008G097401 Sobic010G204300 Sobic010G204300 Sobic002G296300--Sobic010G204300 Sobic002G296300--Sobic007G186300 Sobic003G220600 Sobic003G220600 Sobic002G296300--Sobic003G220600 Sobic003G115800 Sobic003G115800 Sobic002G296300--Sobic003G115800 Sobic003G332401 Sobic003G332401 Sobic002G296300--Sobic003G332401 Sobic001G403700 Sobic001G403700 Sobic002G296300--Sobic001G403700 Sobic002G296300--Sobic003G007500 Sobic001G395400 Sobic001G395400 Sobic003G416400--Sobic001G395400 Sobic002G105200 Sobic002G105200 Sobic003G416400--Sobic002G105200 Sobic002G375300 Sobic002G375300 Sobic003G416400--Sobic002G375300 Sobic003G416400--Sobic001G057800 Sobic003G077900 Sobic003G077900 Sobic003G416400--Sobic003G077900 Sobic003G416400--Sobic002G400000 Sobic003G201900 Sobic003G201900 Sobic003G416400--Sobic003G201900 Sobic003G416400--Sobic002G385900 Sobic001G323000 Sobic001G323000 Sobic003G416400--Sobic001G323000 Sobic006G062800 Sobic006G062800 Sobic002G261900--Sobic006G062800 Sobic002G261900--Sobic007G059900 Sobic002G261900--Sobic002G083266 Sobic002G261900--Sobic001G311100 Sobic001G066700 Sobic001G066700 Sobic002G261900--Sobic001G066700 Sobic002G261900--Sobic003G043400 Sobic002G261900--Sobic010G204300 Sobic009G070200 Sobic009G070200 Sobic002G261900--Sobic009G070200 Sobic004G026200 Sobic004G026200 Sobic002G261900--Sobic004G026200 Sobic007G059900--Sobic003G220600 Sobic007G059900--Sobic006G062800 Sobic007G059900--Sobic010G204300 Sobic007G059900--Sobic007G186300 Sobic007G059900--Sobic002G261900 Sobic008G161000 Sobic008G161000 Sobic007G059900--Sobic008G161000 Sobic004G293700 Sobic004G293700 Sobic007G059900--Sobic004G293700 Sobic007G059900--Sobic002G296300 Sobic009G152200 Sobic009G152200 Sobic007G059900--Sobic009G152200 Sobic001G147200 Sobic001G147200 Sobic003G061900--Sobic001G147200 Sobic010G246000 Sobic010G246000 Sobic003G061900--Sobic010G246000 Sobic006G263100 Sobic006G263100 Sobic003G061900--Sobic006G263100 Sobic003G061900--Sobic001G085900 Sobic001G330700 Sobic001G330700 Sobic003G061900--Sobic001G330700 Sobic003G061900--Sobic010G204300 Sobic003G061900--Sobic001G158500 Sobic003G061900--Sobic007G059900 Sobic002G395600 Sobic002G395600 Sobic003G061900--Sobic002G395600 Sobic001G057800--Sobic001G323000 Sobic001G057800--Sobic002G400000 Sobic002G352700 Sobic002G352700 Sobic001G057800--Sobic002G352700 Sobic001G057800--Sobic002G385900 Sobic001G057800--Sobic001G158500 Sobic004G130900 Sobic004G130900 Sobic001G057800--Sobic004G130900 Sobic010G000900 Sobic010G000900 Sobic001G057800--Sobic010G000900 Sobic001G057800--Sobic010G168600 Sobic009G207000 Sobic009G207000 Sobic001G057800--Sobic009G207000
Octagon: transcription factors


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