Gene annotation
Transcriptome id Sobic.003G061900.2,Sobic.003G061900.1
Synonym Sb03g005270
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XP77
Pfam PF13639
Panther DB PTHR22937:SF54 PTHR22937 PTHR22937 PTHR22937:SF54
NCBI CDD -
KEGG Orthology K19041; E3 ubiquitin-protein ligase RNF38/44
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding GO:0005515protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G15530 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g06590.2 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023359 , Zm00025a035665 , Zm00025a041403
Brachypodium -
Barley -
Wheat TraesCS3A02G103000 , TraesCS3B02G120600 , TraesCS3B02G120600 , TraesCS3D02G105300
Populus -


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cDNA sequences
Sobic.003G061900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
2 Sobic.010G246000 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.006G263100 expressed protein -
4 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
5 Sobic.001G330700 NAD dependent epimerase/dehydratase family protein, putative, expressed -
6 Sobic.010G204300 expressed protein -
7 Sobic.001G158500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LSD1 zinc finger domain containing protein, expressed -
8 Sobic.007G059900 DUF292 domain containing protein, expressed -
9 Sobic.002G395600 bZIP transcription factor domain containing protein, expressed -
10 Sobic.002G261900 arabinogalactan protein, putative, expressed -
11 Sobic.002G083266 - K00326: cytochrome-b5 reductase
12 Sobic.007G125900 protein kinase domain containing protein, expressed -
13 Sobic.009G127000 leucine-rich repeat family protein, putative, expressed -
14 Sobic.001G122500 SNARE associated Golgi protein, putative, expressed -
15 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -
16 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
17 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
18 Sobic.003G019200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
20 Sobic.007G169200 EF hand family protein, putative, expressed K13448: calcium-binding protein CML


Gene co-expression network
sample Sobic003G061900 Sobic003G061900 Sobic001G147200 Sobic001G147200 Sobic003G061900--Sobic001G147200 Sobic010G246000 Sobic010G246000 Sobic003G061900--Sobic010G246000 Sobic006G263100 Sobic006G263100 Sobic003G061900--Sobic006G263100 Sobic001G085900 Sobic001G085900 Sobic003G061900--Sobic001G085900 Sobic001G330700 Sobic001G330700 Sobic003G061900--Sobic001G330700 Sobic010G204300 Sobic010G204300 Sobic003G061900--Sobic010G204300 Sobic001G158500 Sobic001G158500 Sobic003G061900--Sobic001G158500 Sobic007G059900 Sobic007G059900 Sobic003G061900--Sobic007G059900 Sobic002G395600 Sobic002G395600 Sobic003G061900--Sobic002G395600 Sobic003G019200 Sobic003G019200 Sobic001G147200--Sobic003G019200 Sobic001G147200--Sobic010G246000 Sobic002G118600 Sobic002G118600 Sobic001G147200--Sobic002G118600 Sobic001G147200--Sobic010G204300 Sobic006G228300 Sobic006G228300 Sobic001G147200--Sobic006G228300 Sobic001G399100 Sobic001G399100 Sobic001G147200--Sobic001G399100 Sobic001G538866 Sobic001G538866 Sobic001G147200--Sobic001G538866 Sobic002G374100 Sobic002G374100 Sobic001G147200--Sobic002G374100 Sobic001G147200--Sobic006G263100 Sobic002G294700 Sobic002G294700 Sobic010G246000--Sobic002G294700 Sobic010G246000--Sobic002G374100 Sobic010G246000--Sobic003G019200 Sobic010G246000--Sobic001G147200 Sobic010G245800 Sobic010G245800 Sobic010G246000--Sobic010G245800 Sobic008G177800 Sobic008G177800 Sobic010G246000--Sobic008G177800 Sobic002G354900 Sobic002G354900 Sobic010G246000--Sobic002G354900 Sobic010G234600 Sobic010G234600 Sobic010G246000--Sobic010G234600 Sobic004G036600 Sobic004G036600 Sobic010G246000--Sobic004G036600 Sobic004G280800 Sobic004G280800 Sobic006G263100--Sobic004G280800 Sobic006G263100--Sobic010G246000 Sobic001G290400 Sobic001G290400 Sobic006G263100--Sobic001G290400 Sobic002G379400 Sobic002G379400 Sobic006G263100--Sobic002G379400 Sobic002G330300 Sobic002G330300 Sobic006G263100--Sobic002G330300 Sobic006G263100--Sobic001G147200 Sobic006G263100--Sobic002G294700 Sobic010G228000 Sobic010G228000 Sobic006G263100--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic006G263100--Sobic001G409900 Sobic004G039300 Sobic004G039300 Sobic001G085900--Sobic004G039300 Sobic001G313500 Sobic001G313500 Sobic001G085900--Sobic001G313500 Sobic001G085900--Sobic001G158500 Sobic002G083266 Sobic002G083266 Sobic001G085900--Sobic002G083266 Sobic002G385900 Sobic002G385900 Sobic001G085900--Sobic002G385900 Sobic010G129600 Sobic010G129600 Sobic001G085900--Sobic010G129600 Sobic001G298300 Sobic001G298300 Sobic001G085900--Sobic001G298300 Sobic007G006700 Sobic007G006700 Sobic001G085900--Sobic007G006700 Sobic001G085900--Sobic003G061900 Sobic009G152200 Sobic009G152200 Sobic001G330700--Sobic009G152200 Sobic001G330700--Sobic001G147200 Sobic001G330700--Sobic003G019200 Sobic001G330700--Sobic001G399100 Sobic004G058000 Sobic004G058000 Sobic001G330700--Sobic004G058000 Sobic009G111600 Sobic009G111600 Sobic001G330700--Sobic009G111600 Sobic005G117400 Sobic005G117400 Sobic001G330700--Sobic005G117400 Sobic008G161000 Sobic008G161000 Sobic001G330700--Sobic008G161000 Sobic001G330700--Sobic003G061900 Sobic010G204300--Sobic008G161000 Sobic003G115800 Sobic003G115800 Sobic010G204300--Sobic003G115800 Sobic010G204300--Sobic007G059900 Sobic010G204300--Sobic001G147200 Sobic002G296300 Sobic002G296300 Sobic010G204300--Sobic002G296300 Sobic002G202300 Sobic002G202300 Sobic010G204300--Sobic002G202300 Sobic003G181500 Sobic003G181500 Sobic010G204300--Sobic003G181500 Sobic006G062800 Sobic006G062800 Sobic010G204300--Sobic006G062800 Sobic010G204300--Sobic010G246000 Sobic004G102400 Sobic004G102400 Sobic001G158500--Sobic004G102400 Sobic001G057800 Sobic001G057800 Sobic001G158500--Sobic001G057800 Sobic002G375300 Sobic002G375300 Sobic001G158500--Sobic002G375300 Sobic003G367451 Sobic003G367451 Sobic001G158500--Sobic003G367451 Sobic001G158500--Sobic002G083266 Sobic001G433400 Sobic001G433400 Sobic001G158500--Sobic001G433400 Sobic002G264400 Sobic002G264400 Sobic001G158500--Sobic002G264400 Sobic001G158500--Sobic002G385900 Sobic001G158500--Sobic001G085900 Sobic003G220600 Sobic003G220600 Sobic007G059900--Sobic003G220600 Sobic007G059900--Sobic006G062800 Sobic007G059900--Sobic010G204300 Sobic007G186300 Sobic007G186300 Sobic007G059900--Sobic007G186300 Sobic002G261900 Sobic002G261900 Sobic007G059900--Sobic002G261900 Sobic007G059900--Sobic008G161000 Sobic004G293700 Sobic004G293700 Sobic007G059900--Sobic004G293700 Sobic007G059900--Sobic002G296300 Sobic007G059900--Sobic009G152200 Sobic002G395600--Sobic006G263100 Sobic003G392200 Sobic003G392200 Sobic002G395600--Sobic003G392200 Sobic001G214200 Sobic001G214200 Sobic002G395600--Sobic001G214200 Sobic002G395600--Sobic002G330300 Sobic007G178200 Sobic007G178200 Sobic002G395600--Sobic007G178200 Sobic010G017000 Sobic010G017000 Sobic002G395600--Sobic010G017000 Sobic004G026200 Sobic004G026200 Sobic002G395600--Sobic004G026200 Sobic002G395600--Sobic004G280800 Sobic001G283500 Sobic001G283500 Sobic002G395600--Sobic001G283500
Octagon: transcription factors


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