Gene annotation
Transcriptome id Sobic.001G330700.1,Sobic.001G330700.2
Synonym VEP1, AWI31, Sb01g031950
Functional annotation NAD dependent epimerase/dehydratase family protein, putative, expressed
UniProt C5WVM6 , C5WNI2
Pfam -
Panther DB PTHR32487 PTHR32487:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24220 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os03g32170.1 : NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002977 , Zm00025a002976 , Zm00025a002975
Brachypodium KQK14406
Barley HORVU0Hr1G007340.1 , HORVU0Hr1G007340.2 , HORVU0Hr1G007340.3 , HORVU3Hr1G111650.1 , HORVU3Hr1G111650.3 , HORVU3Hr1G111650.2 , HORVU3Hr1G111650.5 , HORVU3Hr1G111650.4
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G330700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G152200 OsFBT7 - F-box and tubby domain containing protein, expressed -
2 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
3 Sobic.003G019200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.001G399100 peroxisomal biogenesis factor 11, putative, expressed -
5 Sobic.004G058000 VQ domain containing protein, putative, expressed -
6 Sobic.009G111600 expressed protein -
7 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
8 Sobic.008G161000 protein kinase domain containing protein, expressed -
9 Sobic.003G061900 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
10 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
11 Sobic.003G275300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytidine/deoxycytidylate deaminase, putative, expressed K01489: cdd, cytidine deaminase
12 Sobic.001G227500 expressed protein -
13 Sobic.007G137700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
14 Sobic.009G147800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@patellin protein, putative, expressed -
15 Sobic.001G125000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@phosphatase, putative, expressed K07025: putative hydrolase of the HAD superfamily
16 Sobic.010G204300 expressed protein -
17 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
18 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
19 Sobic.001G203200 E2F-related protein, putative, expressed -
20 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)


Gene co-expression network
sample Sobic001G330700 Sobic001G330700 Sobic009G152200 Sobic009G152200 Sobic001G330700--Sobic009G152200 Sobic001G147200 Sobic001G147200 Sobic001G330700--Sobic001G147200 Sobic003G019200 Sobic003G019200 Sobic001G330700--Sobic003G019200 Sobic001G399100 Sobic001G399100 Sobic001G330700--Sobic001G399100 Sobic004G058000 Sobic004G058000 Sobic001G330700--Sobic004G058000 Sobic009G111600 Sobic009G111600 Sobic001G330700--Sobic009G111600 Sobic005G117400 Sobic005G117400 Sobic001G330700--Sobic005G117400 Sobic008G161000 Sobic008G161000 Sobic001G330700--Sobic008G161000 Sobic003G061900 Sobic003G061900 Sobic001G330700--Sobic003G061900 Sobic009G152200--Sobic008G161000 Sobic007G186300 Sobic007G186300 Sobic009G152200--Sobic007G186300 Sobic007G059900 Sobic007G059900 Sobic009G152200--Sobic007G059900 Sobic001G403700 Sobic001G403700 Sobic009G152200--Sobic001G403700 Sobic009G152200--Sobic001G330700 Sobic009G016201 Sobic009G016201 Sobic009G152200--Sobic009G016201 Sobic003G115800 Sobic003G115800 Sobic009G152200--Sobic003G115800 Sobic003G248600 Sobic003G248600 Sobic009G152200--Sobic003G248600 Sobic003G249800 Sobic003G249800 Sobic009G152200--Sobic003G249800 Sobic001G147200--Sobic003G019200 Sobic010G246000 Sobic010G246000 Sobic001G147200--Sobic010G246000 Sobic002G118600 Sobic002G118600 Sobic001G147200--Sobic002G118600 Sobic010G204300 Sobic010G204300 Sobic001G147200--Sobic010G204300 Sobic006G228300 Sobic006G228300 Sobic001G147200--Sobic006G228300 Sobic001G147200--Sobic001G399100 Sobic001G538866 Sobic001G538866 Sobic001G147200--Sobic001G538866 Sobic002G374100 Sobic002G374100 Sobic001G147200--Sobic002G374100 Sobic006G263100 Sobic006G263100 Sobic001G147200--Sobic006G263100 Sobic003G019200--Sobic010G246000 Sobic003G019200--Sobic001G147200 Sobic009G200700 Sobic009G200700 Sobic003G019200--Sobic009G200700 Sobic003G019200--Sobic001G399100 Sobic007G198100 Sobic007G198100 Sobic003G019200--Sobic007G198100 Sobic003G019200--Sobic002G374100 Sobic003G429300 Sobic003G429300 Sobic003G019200--Sobic003G429300 Sobic010G224200 Sobic010G224200 Sobic003G019200--Sobic010G224200 Sobic008G111100 Sobic008G111100 Sobic003G019200--Sobic008G111100 Sobic009G033700 Sobic009G033700 Sobic001G399100--Sobic009G033700 Sobic009G046600 Sobic009G046600 Sobic001G399100--Sobic009G046600 Sobic010G107100 Sobic010G107100 Sobic001G399100--Sobic010G107100 Sobic004G186500 Sobic004G186500 Sobic001G399100--Sobic004G186500 Sobic001G399100--Sobic003G019200 Sobic001G399100--Sobic009G200700 Sobic005G028700 Sobic005G028700 Sobic001G399100--Sobic005G028700 Sobic005G229700 Sobic005G229700 Sobic001G399100--Sobic005G229700 Sobic010G086200 Sobic010G086200 Sobic001G399100--Sobic010G086200 Sobic004G058000--Sobic010G107100 Sobic004G058000--Sobic001G399100 Sobic004G058000--Sobic005G117400 Sobic004G058000--Sobic010G224200 Sobic009G241700 Sobic009G241700 Sobic004G058000--Sobic009G241700 Sobic004G158901 Sobic004G158901 Sobic004G058000--Sobic004G158901 Sobic004G058000--Sobic003G019200 Sobic004G050000 Sobic004G050000 Sobic004G058000--Sobic004G050000 Sobic002G249000 Sobic002G249000 Sobic004G058000--Sobic002G249000 Sobic004G284500 Sobic004G284500 Sobic009G111600--Sobic004G284500 Sobic009G111600--Sobic001G403700 Sobic004G276100 Sobic004G276100 Sobic009G111600--Sobic004G276100 Sobic008G179500 Sobic008G179500 Sobic009G111600--Sobic008G179500 Sobic002G083266 Sobic002G083266 Sobic009G111600--Sobic002G083266 Sobic003G367451 Sobic003G367451 Sobic009G111600--Sobic003G367451 Sobic010G213400 Sobic010G213400 Sobic009G111600--Sobic010G213400 Sobic004G272800 Sobic004G272800 Sobic009G111600--Sobic004G272800 Sobic009G111600--Sobic001G399100 Sobic005G117400--Sobic004G158901 Sobic007G125900 Sobic007G125900 Sobic005G117400--Sobic007G125900 Sobic005G117400--Sobic004G058000 Sobic005G117400--Sobic002G249000 Sobic003G348400 Sobic003G348400 Sobic005G117400--Sobic003G348400 Sobic005G117400--Sobic004G050000 Sobic003G232900 Sobic003G232900 Sobic005G117400--Sobic003G232900 Sobic007G025700 Sobic007G025700 Sobic005G117400--Sobic007G025700 Sobic005G117400--Sobic010G224200 Sobic008G161000--Sobic003G249800 Sobic008G161000--Sobic009G033700 Sobic008G161000--Sobic009G152200 Sobic001G037000 Sobic001G037000 Sobic008G161000--Sobic001G037000 Sobic009G129000 Sobic009G129000 Sobic008G161000--Sobic009G129000 Sobic008G161000--Sobic009G016201 Sobic008G161000--Sobic010G204300 Sobic010G204600 Sobic010G204600 Sobic008G161000--Sobic010G204600 Sobic008G161000--Sobic010G213400 Sobic003G061900--Sobic001G147200 Sobic003G061900--Sobic010G246000 Sobic003G061900--Sobic006G263100 Sobic001G085900 Sobic001G085900 Sobic003G061900--Sobic001G085900 Sobic003G061900--Sobic001G330700 Sobic003G061900--Sobic010G204300 Sobic001G158500 Sobic001G158500 Sobic003G061900--Sobic001G158500 Sobic003G061900--Sobic007G059900 Sobic002G395600 Sobic002G395600 Sobic003G061900--Sobic002G395600
Octagon: transcription factors


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