Gene annotation
Transcriptome id Sobic.007G137700.1
Synonym Sb07g021330, ATRNS1, RNS1
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
ribonuclease T2 family domain containing protein, expressed
UniProt C5YL90
Pfam PF00445
Panther DB PTHR11240 PTHR11240:SF19
NCBI CDD KOG1642; Ribonuclease, T2 family
KEGG Orthology K01166; ribonuclease T2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G02990 : ribonuclease 1
RAP-DB (Rice) LOC_Os08g33710.1 : ribonuclease T2 family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005919
Brachypodium PNT68202 , PNT68203
Barley HORVU0Hr1G017230.2 , HORVU6Hr1G081930.1 , HORVU0Hr1G017230.1 , HORVU0Hr1G017230.3 , HORVU6Hr1G081950.2 , HORVU6Hr1G081950.4 , HORVU2Hr1G062880.1 , HORVU2Hr1G062880.2 , HORVU2Hr1G062880.3 , HORVU2Hr1G062880.4 , HORVU2Hr1G062880.5 , HORVU2Hr1G062880.6 , HORVU2Hr1G062880.7 , HORVU2Hr1G062880.8 , HORVU2Hr1G028430.4 , HORVU2Hr1G028430.2 , HORVU2Hr1G028430.1 , HORVU6Hr1G081950.1 , HORVU6Hr1G081950.3
Wheat TraesCS2D02G163300 , TraesCS2A02G157400 , TraesCS6A02G339600 , TraesCS2B02G278200 , TraesCS6B02G370600 , TraesCS2B02G182900 , TraesCS6D02G320200 , TraesCS2D02G260000 , TraesCS2A02G264000 , TraesCS2D02G163200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G137700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G307000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
2 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
3 Sobic.002G055600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
4 Sobic.002G195900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
5 Sobic.002G356101 - -
6 Sobic.002G423300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.003G019200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
9 Sobic.001G399100 peroxisomal biogenesis factor 11, putative, expressed -
10 Sobic.007G198100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@membrane protein, putative, expressed -
11 Sobic.001G247300 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
12 Sobic.010G069200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
13 Sobic.006G121500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytochrome P450, putative, expressed -
14 Sobic.009G254900 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
15 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
16 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
17 Sobic.003G158500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
18 Sobic.001G054300 expressed protein -
19 Sobic.010G224200 MYB family transcription factor, putative, expressed -
20 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G137700 Sobic007G137700 Sobic004G307000 Sobic004G307000 Sobic007G137700--Sobic004G307000 Sobic007G171000 Sobic007G171000 Sobic007G137700--Sobic007G171000 Sobic002G055600 Sobic002G055600 Sobic007G137700--Sobic002G055600 Sobic002G195900 Sobic002G195900 Sobic007G137700--Sobic002G195900 Sobic002G356101 Sobic002G356101 Sobic007G137700--Sobic002G356101 Sobic002G423300 Sobic002G423300 Sobic007G137700--Sobic002G423300 Sobic003G019200 Sobic003G019200 Sobic007G137700--Sobic003G019200 Sobic004G050000 Sobic004G050000 Sobic007G137700--Sobic004G050000 Sobic001G399100 Sobic001G399100 Sobic007G137700--Sobic001G399100 Sobic009G177800 Sobic009G177800 Sobic004G307000--Sobic009G177800 Sobic003G322900 Sobic003G322900 Sobic004G307000--Sobic003G322900 Sobic004G307000--Sobic007G137700 Sobic008G111100 Sobic008G111100 Sobic004G307000--Sobic008G111100 Sobic004G307000--Sobic002G195900 Sobic004G307000--Sobic002G055600 Sobic004G307000--Sobic004G050000 Sobic004G307000--Sobic002G423300 Sobic002G117100 Sobic002G117100 Sobic004G307000--Sobic002G117100 Sobic009G155200 Sobic009G155200 Sobic007G171000--Sobic009G155200 Sobic007G171000--Sobic002G195900 Sobic003G429300 Sobic003G429300 Sobic007G171000--Sobic003G429300 Sobic001G119000 Sobic001G119000 Sobic007G171000--Sobic001G119000 Sobic007G171000--Sobic009G177800 Sobic002G359300 Sobic002G359300 Sobic007G171000--Sobic002G359300 Sobic002G046100 Sobic002G046100 Sobic007G171000--Sobic002G046100 Sobic007G171000--Sobic008G111100 Sobic007G171000--Sobic007G137700 Sobic004G237800 Sobic004G237800 Sobic002G055600--Sobic004G237800 Sobic005G091500 Sobic005G091500 Sobic002G055600--Sobic005G091500 Sobic008G136400 Sobic008G136400 Sobic002G055600--Sobic008G136400 Sobic004G321300 Sobic004G321300 Sobic002G055600--Sobic004G321300 Sobic004G189400 Sobic004G189400 Sobic002G055600--Sobic004G189400 Sobic002G055700 Sobic002G055700 Sobic002G055600--Sobic002G055700 Sobic003G334600 Sobic003G334600 Sobic002G055600--Sobic003G334600 Sobic002G183200 Sobic002G183200 Sobic002G055600--Sobic002G183200 Sobic004G189500 Sobic004G189500 Sobic002G055600--Sobic004G189500 Sobic002G195900--Sobic002G359300 Sobic001G040200 Sobic001G040200 Sobic002G195900--Sobic001G040200 Sobic002G195900--Sobic007G171000 Sobic002G195900--Sobic003G334600 Sobic002G195900--Sobic002G356101 Sobic002G195900--Sobic009G177800 Sobic009G183300 Sobic009G183300 Sobic002G195900--Sobic009G183300 Sobic002G195900--Sobic002G055600 Sobic003G430400 Sobic003G430400 Sobic002G195900--Sobic003G430400 Sobic010G086200 Sobic010G086200 Sobic002G356101--Sobic010G086200 Sobic007G074000 Sobic007G074000 Sobic002G356101--Sobic007G074000 Sobic004G065500 Sobic004G065500 Sobic002G356101--Sobic004G065500 Sobic001G247300 Sobic001G247300 Sobic002G356101--Sobic001G247300 Sobic009G247900 Sobic009G247900 Sobic002G356101--Sobic009G247900 Sobic002G356101--Sobic003G430400 Sobic009G184000 Sobic009G184000 Sobic002G356101--Sobic009G184000 Sobic005G196800 Sobic005G196800 Sobic002G356101--Sobic005G196800 Sobic009G200700 Sobic009G200700 Sobic002G356101--Sobic009G200700 Sobic002G423300--Sobic003G334600 Sobic003G369100 Sobic003G369100 Sobic002G423300--Sobic003G369100 Sobic002G423300--Sobic008G136400 Sobic002G423300--Sobic002G055600 Sobic009G234100 Sobic009G234100 Sobic002G423300--Sobic009G234100 Sobic002G333400 Sobic002G333400 Sobic002G423300--Sobic002G333400 Sobic004G208700 Sobic004G208700 Sobic002G423300--Sobic004G208700 Sobic002G423300--Sobic004G237800 Sobic003G345100 Sobic003G345100 Sobic002G423300--Sobic003G345100 Sobic010G246000 Sobic010G246000 Sobic003G019200--Sobic010G246000 Sobic001G147200 Sobic001G147200 Sobic003G019200--Sobic001G147200 Sobic003G019200--Sobic009G200700 Sobic003G019200--Sobic001G399100 Sobic007G198100 Sobic007G198100 Sobic003G019200--Sobic007G198100 Sobic002G374100 Sobic002G374100 Sobic003G019200--Sobic002G374100 Sobic003G019200--Sobic003G429300 Sobic010G224200 Sobic010G224200 Sobic003G019200--Sobic010G224200 Sobic003G019200--Sobic008G111100 Sobic009G043600 Sobic009G043600 Sobic004G050000--Sobic009G043600 Sobic001G066000 Sobic001G066000 Sobic004G050000--Sobic001G066000 Sobic004G049900 Sobic004G049900 Sobic004G050000--Sobic004G049900 Sobic004G277000 Sobic004G277000 Sobic004G050000--Sobic004G277000 Sobic002G267500 Sobic002G267500 Sobic004G050000--Sobic002G267500 Sobic006G121500 Sobic006G121500 Sobic004G050000--Sobic006G121500 Sobic002G090200 Sobic002G090200 Sobic004G050000--Sobic002G090200 Sobic004G050000--Sobic009G177800 Sobic006G108400 Sobic006G108400 Sobic004G050000--Sobic006G108400 Sobic009G033700 Sobic009G033700 Sobic001G399100--Sobic009G033700 Sobic009G046600 Sobic009G046600 Sobic001G399100--Sobic009G046600 Sobic010G107100 Sobic010G107100 Sobic001G399100--Sobic010G107100 Sobic004G186500 Sobic004G186500 Sobic001G399100--Sobic004G186500 Sobic001G399100--Sobic003G019200 Sobic001G399100--Sobic009G200700 Sobic005G028700 Sobic005G028700 Sobic001G399100--Sobic005G028700 Sobic005G229700 Sobic005G229700 Sobic001G399100--Sobic005G229700 Sobic001G399100--Sobic010G086200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.