Gene annotation
Transcriptome id Sobic.001G054300.1
Synonym Sb01g004980
Functional annotation expressed protein
UniProt C5WX44
Pfam -
Panther DB PTHR33983 PTHR33983:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57450 : -
RAP-DB (Rice) LOC_Os03g52410.1 : expressed protein
MaizeGDB (Corn) Zm00025a008592
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
2 Sobic.004G169300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain-containing protein, putative, expressed -
3 Sobic.009G069700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@Transcriptional repressor(PubMedID : 30367619)@OsIAA16 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
4 Sobic.002G323300 ankyrin repeat family protein, putative, expressed -
5 Sobic.007G197600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
6 Sobic.007G008100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
7 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
8 Sobic.010G156500 expressed protein -
9 Sobic.001G247300 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
10 Sobic.002G042000 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.007G008000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@invertase/pectin methylesterase inhibitor family protein, putative, expressed -
12 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
13 Sobic.004G313100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
14 Sobic.007G137700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
15 Sobic.004G203700 ubiquitin family protein, putative, expressed -
16 Sobic.005G196800 membrane protein, putative, expressed -
17 Sobic.010G166500 amino acid transporter, putative, expressed -
18 Sobic.001G054500 expressed protein -
19 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
20 Sobic.004G045400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae


Gene co-expression network
sample Sobic001G054300 Sobic001G054300 Sobic003G364300 Sobic003G364300 Sobic001G054300--Sobic003G364300 Sobic004G169300 Sobic004G169300 Sobic001G054300--Sobic004G169300 Sobic009G069700 Sobic009G069700 Sobic001G054300--Sobic009G069700 Sobic002G323300 Sobic002G323300 Sobic001G054300--Sobic002G323300 Sobic007G197600 Sobic007G197600 Sobic001G054300--Sobic007G197600 Sobic007G008100 Sobic007G008100 Sobic001G054300--Sobic007G008100 Sobic008G139600 Sobic008G139600 Sobic001G054300--Sobic008G139600 Sobic010G156500 Sobic010G156500 Sobic001G054300--Sobic010G156500 Sobic001G247300 Sobic001G247300 Sobic001G054300--Sobic001G247300 Sobic003G364300--Sobic010G156500 Sobic009G231000 Sobic009G231000 Sobic003G364300--Sobic009G231000 Sobic002G338500 Sobic002G338500 Sobic003G364300--Sobic002G338500 Sobic003G364000 Sobic003G364000 Sobic003G364300--Sobic003G364000 Sobic003G364300--Sobic007G008100 Sobic002G042000 Sobic002G042000 Sobic003G364300--Sobic002G042000 Sobic003G382600 Sobic003G382600 Sobic003G364300--Sobic003G382600 Sobic001G054500 Sobic001G054500 Sobic003G364300--Sobic001G054500 Sobic002G302500 Sobic002G302500 Sobic003G364300--Sobic002G302500 Sobic008G066200 Sobic008G066200 Sobic004G169300--Sobic008G066200 Sobic009G200566 Sobic009G200566 Sobic004G169300--Sobic009G200566 Sobic004G169300--Sobic008G139600 Sobic010G166500 Sobic010G166500 Sobic004G169300--Sobic010G166500 Sobic008G158800 Sobic008G158800 Sobic004G169300--Sobic008G158800 Sobic006G101300 Sobic006G101300 Sobic004G169300--Sobic006G101300 Sobic009G145700 Sobic009G145700 Sobic004G169300--Sobic009G145700 Sobic001G280800 Sobic001G280800 Sobic004G169300--Sobic001G280800 Sobic004G169300--Sobic002G323300 Sobic003G158500 Sobic003G158500 Sobic009G069700--Sobic003G158500 Sobic009G069700--Sobic008G139600 Sobic009G069700--Sobic001G247300 Sobic009G069700--Sobic004G169300 Sobic003G360000 Sobic003G360000 Sobic009G069700--Sobic003G360000 Sobic010G036800 Sobic010G036800 Sobic009G069700--Sobic010G036800 Sobic003G264500 Sobic003G264500 Sobic009G069700--Sobic003G264500 Sobic001G407800 Sobic001G407800 Sobic009G069700--Sobic001G407800 Sobic007G151100 Sobic007G151100 Sobic009G069700--Sobic007G151100 Sobic009G069800 Sobic009G069800 Sobic002G323300--Sobic009G069800 Sobic004G336500 Sobic004G336500 Sobic002G323300--Sobic004G336500 Sobic001G115300 Sobic001G115300 Sobic002G323300--Sobic001G115300 Sobic002G389400 Sobic002G389400 Sobic002G323300--Sobic002G389400 Sobic002G323300--Sobic004G169300 Sobic002G323300--Sobic010G166500 Sobic003G367200 Sobic003G367200 Sobic002G323300--Sobic003G367200 Sobic002G323300--Sobic001G280800 Sobic004G321300 Sobic004G321300 Sobic002G323300--Sobic004G321300 Sobic009G159200 Sobic009G159200 Sobic007G197600--Sobic009G159200 Sobic007G197600--Sobic008G139600 Sobic007G197600--Sobic007G008100 Sobic010G259900 Sobic010G259900 Sobic007G197600--Sobic010G259900 Sobic007G197600--Sobic004G321300 Sobic006G157500 Sobic006G157500 Sobic007G197600--Sobic006G157500 Sobic007G197600--Sobic003G360000 Sobic007G197600--Sobic002G323300 Sobic004G203700 Sobic004G203700 Sobic007G197600--Sobic004G203700 Sobic007G008100--Sobic002G042000 Sobic007G008100--Sobic001G054500 Sobic007G008100--Sobic004G336500 Sobic007G008100--Sobic003G364300 Sobic007G008000 Sobic007G008000 Sobic007G008100--Sobic007G008000 Sobic007G008100--Sobic009G069800 Sobic009G154200 Sobic009G154200 Sobic007G008100--Sobic009G154200 Sobic007G008100--Sobic008G139600 Sobic002G040900 Sobic002G040900 Sobic007G008100--Sobic002G040900 Sobic006G054800 Sobic006G054800 Sobic008G139600--Sobic006G054800 Sobic008G139600--Sobic004G321300 Sobic001G112200 Sobic001G112200 Sobic008G139600--Sobic001G112200 Sobic004G237800 Sobic004G237800 Sobic008G139600--Sobic004G237800 Sobic008G139600--Sobic009G145700 Sobic002G055700 Sobic002G055700 Sobic008G139600--Sobic002G055700 Sobic009G184000 Sobic009G184000 Sobic008G139600--Sobic009G184000 Sobic003G043500 Sobic003G043500 Sobic008G139600--Sobic003G043500 Sobic009G145600 Sobic009G145600 Sobic008G139600--Sobic009G145600 Sobic010G156500--Sobic003G364300 Sobic010G156500--Sobic002G338500 Sobic010G156500--Sobic003G364000 Sobic010G156500--Sobic003G382600 Sobic005G213500 Sobic005G213500 Sobic010G156500--Sobic005G213500 Sobic001G279500 Sobic001G279500 Sobic010G156500--Sobic001G279500 Sobic010G156500--Sobic002G302500 Sobic003G280200 Sobic003G280200 Sobic010G156500--Sobic003G280200 Sobic010G156500--Sobic009G231000 Sobic005G196800 Sobic005G196800 Sobic001G247300--Sobic005G196800 Sobic003G043600 Sobic003G043600 Sobic001G247300--Sobic003G043600 Sobic003G092900 Sobic003G092900 Sobic001G247300--Sobic003G092900 Sobic001G247300--Sobic004G237800 Sobic001G247300--Sobic009G184000 Sobic006G183400 Sobic006G183400 Sobic001G247300--Sobic006G183400 Sobic001G247300--Sobic002G338500 Sobic007G074000 Sobic007G074000 Sobic001G247300--Sobic007G074000 Sobic001G247300--Sobic003G382600
Octagon: transcription factors


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