Gene annotation
| Transcriptome id | Sobic.007G008000.1 |
|---|---|
| Synonym | C/VIF2, Sb07g000850, ATC/VIF2 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543) invertase/pectin methylesterase inhibitor family protein, putative, expressed |
| UniProt | C5YLJ9 |
| Pfam | PF04043 |
| Panther DB | PTHR31080 PTHR31080:SF22 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0004857; enzyme inhibitor activity |
Orthologs (automatic annotation)
| TAIR | AT5G64620 : cell wall / vacuolar inhibitor of fructosidase 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os08g01670.1 : invertase/pectin methylesterase inhibitor family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a030307 , Zm00025a040171 , Zm00025a040172 |
| Brachypodium | KQJ94797 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G008100 | invertase/pectin methylesterase inhibitor family protein, putative, expressed | - |
| 2 | Sobic.002G042000 | gibberellin receptor GID1L2, putative, expressed | - |
| 3 | Sobic.001G259900 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 4 | Sobic.010G082600 | EF hand family protein, putative, expressed | - |
| 5 | Sobic.001G054500 | expressed protein | - |
| 6 | Sobic.006G101300 | expressed protein | - |
| 7 | Sobic.002G338500 | sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed | - |
| 8 | Sobic.008G139600 | lectin-like receptor kinase, putative, expressed | - |
| 9 | Sobic.009G145700 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 10 | Sobic.009G184000 | ICE-like protease p20 domain containing protein, putative, expressed | - |
| 11 | Sobic.003G043600 | BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed | - |
| 12 | Sobic.001G310600 | expressed protein | - |
| 13 | Sobic.007G169700 | inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed | K01240: uridine nucleosidase |
| 14 | Sobic.005G213600 | Deletion of the Low Germination Stimulant 1 (LGS1) gene gives a Striga‐resistance trait in sorghum. Strigolactone precursor 18-hydroxycarlactonoic acid (18-OH-CLA) is a substrate for LGS1.(PubMedID : 34525227)@sulfotransferase domain containing protein, expressed | - |
| 15 | Sobic.006G054800 | "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in stay green (QSTG1_6) "(PubMedID : 24655390)@Glycerophosphodiester phosphodiesterase ( At)(PubMedID : 27208977)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed | - |
| 16 | Sobic.001G247300 | "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed | K01537: P-type Ca2+ transporter type 2C |
| 17 | Sobic.010G043900 | expressed protein | - |
| 18 | Sobic.008G044300 | U-box domain-containing protein, putative, expressed | - |
| 19 | Sobic.010G225251 | - | - |
| 20 | Sobic.003G432700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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