Gene annotation
Transcriptome id Sobic.004G313100.1
Synonym ACC oxidase 1, Sb04g034520, EFE, ACO4, EAT1
Functional annotation Decreased expression in phyB-1 mutant (PubMedID : 26893475)
1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed
UniProt O81607 , C5XTH3
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF179
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology K05933; aminocyclopropanecarboxylate oxidase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G05010 : ethylene-forming enzyme
RAP-DB (Rice) LOC_Os02g53180.2 : 1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed
MaizeGDB (Corn) Zm00025a033063 , Zm00025a022260 , Zm00025a038390 , Zm00025a047223
Brachypodium KQJ90477 , KQK08434 , PNT72253 , KQK01696
Barley HORVU7Hr1G028710.2 , HORVU7Hr1G028710.1 , HORVU5Hr1G067530.1 , HORVU5Hr1G067530.2 , HORVU5Hr1G067530.3 , HORVU5Hr1G067530.4 , HORVU5Hr1G067490.4 , HORVU5Hr1G067490.3 , HORVU5Hr1G067490.2 , HORVU5Hr1G067490.1 , HORVU7Hr1G116830.1 , HORVU7Hr1G116830.2 , HORVU7Hr1G116830.3 , HORVU7Hr1G116830.4 , HORVU7Hr1G116830.5 , HORVU7Hr1G116830.6 , HORVU7Hr1G116830.7 , HORVU6Hr1G079600.6 , HORVU6Hr1G079600.4 , HORVU6Hr1G079600.5 , HORVU6Hr1G079600.2 , HORVU6Hr1G079600.3 , HORVU6Hr1G079600.1 , HORVU6Hr1G079640.2 , HORVU6Hr1G079640.3 , HORVU6Hr1G079640.1 , HORVU6Hr1G079640.6 , HORVU6Hr1G079640.7 , HORVU6Hr1G079640.4 , HORVU6Hr1G079640.5
Wheat TraesCS6A02G325600 , TraesCS6D02G305400 , TraesCS6A02G325400 , TraesCS6A02G325700 , TraesCS6B02G355700 , TraesCS5D02G241000 , TraesCS6A02G325500 , TraesCS7D02G516200 , TraesCS6B02G355800 , TraesCS5B02G232600 , TraesCS5A02G234300 , TraesCS5A02G234300 , TraesCS6B02G356200 , TraesCS6B02G355900 , TraesCS5B02G232700 , TraesCS5D02G241100 , TraesCS5D02G241100 , TraesCS6B02G356000 , TraesCS5A02G234200 , TraesCS6D02G305100 , TraesCS6D02G305100 , TraesCS6D02G305200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G313100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G156200 cytochrome P450, putative, expressed -
2 Sobic.002G203700 hypothetical protein -
3 Sobic.004G189500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.005G196800 membrane protein, putative, expressed -
5 Sobic.003G322900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.003G382600 ARGOS, putative, expressed -
8 Sobic.002G055600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
9 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
10 Sobic.004G189400 expressed protein -
11 Sobic.008G136400 expressed protein -
12 Sobic.005G029200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
13 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
14 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
15 Sobic.010G166500 amino acid transporter, putative, expressed -
16 Sobic.004G148000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@Cupin domain containing protein, expressed -
17 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
18 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
19 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
20 Sobic.003G417700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -


Gene co-expression network
sample Sobic004G313100 Sobic004G313100 Sobic003G156200 Sobic003G156200 Sobic004G313100--Sobic003G156200 Sobic002G203700 Sobic002G203700 Sobic004G313100--Sobic002G203700 Sobic004G189500 Sobic004G189500 Sobic004G313100--Sobic004G189500 Sobic005G196800 Sobic005G196800 Sobic004G313100--Sobic005G196800 Sobic003G322900 Sobic003G322900 Sobic004G313100--Sobic003G322900 Sobic004G321300 Sobic004G321300 Sobic004G313100--Sobic004G321300 Sobic003G382600 Sobic003G382600 Sobic004G313100--Sobic003G382600 Sobic002G055600 Sobic002G055600 Sobic004G313100--Sobic002G055600 Sobic001G038900 Sobic001G038900 Sobic004G313100--Sobic001G038900 Sobic003G156200--Sobic002G203700 Sobic003G417700 Sobic003G417700 Sobic003G156200--Sobic003G417700 Sobic003G156200--Sobic004G313100 Sobic003G280200 Sobic003G280200 Sobic003G156200--Sobic003G280200 Sobic002G415100 Sobic002G415100 Sobic003G156200--Sobic002G415100 Sobic003G301600 Sobic003G301600 Sobic003G156200--Sobic003G301600 Sobic010G213700 Sobic010G213700 Sobic003G156200--Sobic010G213700 Sobic005G029200 Sobic005G029200 Sobic003G156200--Sobic005G029200 Sobic004G148200 Sobic004G148200 Sobic003G156200--Sobic004G148200 Sobic002G203700--Sobic003G156200 Sobic002G203700--Sobic003G301600 Sobic002G203700--Sobic004G313100 Sobic005G183100 Sobic005G183100 Sobic002G203700--Sobic005G183100 Sobic002G057900 Sobic002G057900 Sobic002G203700--Sobic002G057900 Sobic001G317000 Sobic001G317000 Sobic002G203700--Sobic001G317000 Sobic002G034800 Sobic002G034800 Sobic002G203700--Sobic002G034800 Sobic002G329800 Sobic002G329800 Sobic002G203700--Sobic002G329800 Sobic002G203700--Sobic010G213700 Sobic004G189500--Sobic004G148200 Sobic002G055700 Sobic002G055700 Sobic004G189500--Sobic002G055700 Sobic004G189400 Sobic004G189400 Sobic004G189500--Sobic004G189400 Sobic005G091500 Sobic005G091500 Sobic004G189500--Sobic005G091500 Sobic006G039100 Sobic006G039100 Sobic004G189500--Sobic006G039100 Sobic003G297600 Sobic003G297600 Sobic004G189500--Sobic003G297600 Sobic004G189500--Sobic005G029200 Sobic009G231000 Sobic009G231000 Sobic004G189500--Sobic009G231000 Sobic004G189500--Sobic010G213700 Sobic001G247300 Sobic001G247300 Sobic005G196800--Sobic001G247300 Sobic004G237800 Sobic004G237800 Sobic005G196800--Sobic004G237800 Sobic001G390300 Sobic001G390300 Sobic005G196800--Sobic001G390300 Sobic002G338500 Sobic002G338500 Sobic005G196800--Sobic002G338500 Sobic005G196800--Sobic004G321300 Sobic006G183400 Sobic006G183400 Sobic005G196800--Sobic006G183400 Sobic005G196800--Sobic003G382600 Sobic003G043600 Sobic003G043600 Sobic005G196800--Sobic003G043600 Sobic005G196800--Sobic002G055700 Sobic002G263400 Sobic002G263400 Sobic003G322900--Sobic002G263400 Sobic003G322900--Sobic004G189400 Sobic002G183200 Sobic002G183200 Sobic003G322900--Sobic002G183200 Sobic004G148000 Sobic004G148000 Sobic003G322900--Sobic004G148000 Sobic003G322900--Sobic003G382600 Sobic003G322900--Sobic005G091500 Sobic002G140400 Sobic002G140400 Sobic003G322900--Sobic002G140400 Sobic007G155100 Sobic007G155100 Sobic003G322900--Sobic007G155100 Sobic003G307801 Sobic003G307801 Sobic003G322900--Sobic003G307801 Sobic004G321300--Sobic004G237800 Sobic009G159400 Sobic009G159400 Sobic004G321300--Sobic009G159400 Sobic008G136400 Sobic008G136400 Sobic004G321300--Sobic008G136400 Sobic008G139600 Sobic008G139600 Sobic004G321300--Sobic008G139600 Sobic004G321300--Sobic001G038900 Sobic004G321300--Sobic002G055700 Sobic001G140900 Sobic001G140900 Sobic004G321300--Sobic001G140900 Sobic004G321300--Sobic005G091500 Sobic003G345100 Sobic003G345100 Sobic004G321300--Sobic003G345100 Sobic003G382600--Sobic002G055700 Sobic003G382600--Sobic004G189400 Sobic003G382600--Sobic002G338500 Sobic002G353900 Sobic002G353900 Sobic003G382600--Sobic002G353900 Sobic003G303100 Sobic003G303100 Sobic003G382600--Sobic003G303100 Sobic003G382600--Sobic004G237800 Sobic003G382600--Sobic005G091500 Sobic008G050600 Sobic008G050600 Sobic003G382600--Sobic008G050600 Sobic003G382600--Sobic003G043600 Sobic002G055600--Sobic004G237800 Sobic002G055600--Sobic005G091500 Sobic002G055600--Sobic008G136400 Sobic002G055600--Sobic004G321300 Sobic002G055600--Sobic004G189400 Sobic002G055600--Sobic002G055700 Sobic003G334600 Sobic003G334600 Sobic002G055600--Sobic003G334600 Sobic002G055600--Sobic002G183200 Sobic002G055600--Sobic004G189500 Sobic001G038900--Sobic002G140400 Sobic001G038900--Sobic001G140900 Sobic001G038900--Sobic008G136400 Sobic001G038900--Sobic008G050600 Sobic001G423800 Sobic001G423800 Sobic001G038900--Sobic001G423800 Sobic001G038900--Sobic009G159400 Sobic001G038900--Sobic003G345100 Sobic001G367600 Sobic001G367600 Sobic001G038900--Sobic001G367600 Sobic001G038900--Sobic004G189400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.