Gene annotation
Transcriptome id Sobic.004G148000.1
Synonym Sb04g019640
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence (PubMedID : 27586543)
Cupin domain containing protein, expressed
UniProt C5XRU6
Pfam PF07883
Panther DB PTHR31238 PTHR31238:SF31
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05950 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os02g29000.1 : Cupin domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ99516 , KQJ99515
Barley -
Wheat TraesCS1B02G069900 , TraesCS1B02G069600 , TraesCSU02G007100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G263400 expressed protein -
2 Sobic.004G189400 expressed protein -
3 Sobic.003G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@WRKY27, expressed -
4 Sobic.004G148200 Cupin domain containing protein, expressed -
5 Sobic.007G061300 - -
6 Sobic.008G136400 expressed protein -
7 Sobic.003G322900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.002G055600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
10 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
11 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
13 Sobic.004G189500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.005G029200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
15 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
16 Sobic.006G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
17 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
18 Sobic.004G243100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.002G251000 expressed protein -
20 Sobic.001G317000 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic004G148000 Sobic004G148000 Sobic002G263400 Sobic002G263400 Sobic004G148000--Sobic002G263400 Sobic004G189400 Sobic004G189400 Sobic004G148000--Sobic004G189400 Sobic003G200700 Sobic003G200700 Sobic004G148000--Sobic003G200700 Sobic004G148200 Sobic004G148200 Sobic004G148000--Sobic004G148200 Sobic007G061300 Sobic007G061300 Sobic004G148000--Sobic007G061300 Sobic008G136400 Sobic008G136400 Sobic004G148000--Sobic008G136400 Sobic003G322900 Sobic003G322900 Sobic004G148000--Sobic003G322900 Sobic002G140400 Sobic002G140400 Sobic004G148000--Sobic002G140400 Sobic002G055600 Sobic002G055600 Sobic004G148000--Sobic002G055600 Sobic002G263400--Sobic002G140400 Sobic002G263400--Sobic004G189400 Sobic003G282901 Sobic003G282901 Sobic002G263400--Sobic003G282901 Sobic004G243100 Sobic004G243100 Sobic002G263400--Sobic004G243100 Sobic001G018300 Sobic001G018300 Sobic002G263400--Sobic001G018300 Sobic001G423800 Sobic001G423800 Sobic002G263400--Sobic001G423800 Sobic002G192000 Sobic002G192000 Sobic002G263400--Sobic002G192000 Sobic001G231400 Sobic001G231400 Sobic002G263400--Sobic001G231400 Sobic002G263400--Sobic003G322900 Sobic004G189400--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G189400--Sobic005G091500 Sobic004G189400--Sobic002G263400 Sobic008G050600 Sobic008G050600 Sobic004G189400--Sobic008G050600 Sobic004G237800 Sobic004G237800 Sobic004G189400--Sobic004G237800 Sobic003G382600 Sobic003G382600 Sobic004G189400--Sobic003G382600 Sobic006G099900 Sobic006G099900 Sobic004G189400--Sobic006G099900 Sobic004G189400--Sobic008G136400 Sobic005G029200 Sobic005G029200 Sobic004G189400--Sobic005G029200 Sobic007G227300 Sobic007G227300 Sobic003G200700--Sobic007G227300 Sobic006G268800 Sobic006G268800 Sobic003G200700--Sobic006G268800 Sobic010G211900 Sobic010G211900 Sobic003G200700--Sobic010G211900 Sobic003G200700--Sobic004G148200 Sobic003G264400 Sobic003G264400 Sobic003G200700--Sobic003G264400 Sobic003G200700--Sobic006G099900 Sobic003G200700--Sobic001G231400 Sobic005G101800 Sobic005G101800 Sobic003G200700--Sobic005G101800 Sobic003G200700--Sobic004G243100 Sobic004G148200--Sobic005G029200 Sobic002G055700 Sobic002G055700 Sobic004G148200--Sobic002G055700 Sobic004G189500 Sobic004G189500 Sobic004G148200--Sobic004G189500 Sobic004G148200--Sobic007G227300 Sobic004G148200--Sobic004G189400 Sobic003G303100 Sobic003G303100 Sobic004G148200--Sobic003G303100 Sobic004G148200--Sobic006G268800 Sobic009G145500 Sobic009G145500 Sobic004G148200--Sobic009G145500 Sobic004G148200--Sobic003G200700 Sobic007G061300--Sobic004G189400 Sobic007G061300--Sobic002G263400 Sobic001G187200 Sobic001G187200 Sobic007G061300--Sobic001G187200 Sobic007G061300--Sobic004G148000 Sobic007G061300--Sobic004G148200 Sobic007G061300--Sobic005G029200 Sobic004G088551 Sobic004G088551 Sobic007G061300--Sobic004G088551 Sobic010G084400 Sobic010G084400 Sobic007G061300--Sobic010G084400 Sobic007G061300--Sobic007G227300 Sobic001G038900 Sobic001G038900 Sobic008G136400--Sobic001G038900 Sobic008G136400--Sobic008G050600 Sobic008G136400--Sobic002G140400 Sobic006G275200 Sobic006G275200 Sobic008G136400--Sobic006G275200 Sobic001G140900 Sobic001G140900 Sobic008G136400--Sobic001G140900 Sobic006G158600 Sobic006G158600 Sobic008G136400--Sobic006G158600 Sobic008G136400--Sobic004G189400 Sobic008G136400--Sobic001G423800 Sobic009G008900 Sobic009G008900 Sobic008G136400--Sobic009G008900 Sobic003G322900--Sobic002G263400 Sobic003G322900--Sobic004G189400 Sobic002G183200 Sobic002G183200 Sobic003G322900--Sobic002G183200 Sobic003G322900--Sobic004G148000 Sobic003G322900--Sobic003G382600 Sobic003G322900--Sobic005G091500 Sobic003G322900--Sobic002G140400 Sobic007G155100 Sobic007G155100 Sobic003G322900--Sobic007G155100 Sobic003G307801 Sobic003G307801 Sobic003G322900--Sobic003G307801 Sobic002G140400--Sobic001G038900 Sobic002G140400--Sobic002G263400 Sobic002G140400--Sobic004G189400 Sobic002G140400--Sobic001G423800 Sobic002G140400--Sobic008G136400 Sobic007G074000 Sobic007G074000 Sobic002G140400--Sobic007G074000 Sobic002G140400--Sobic004G237800 Sobic002G140400--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic002G140400--Sobic003G286600 Sobic002G055600--Sobic004G237800 Sobic002G055600--Sobic005G091500 Sobic002G055600--Sobic008G136400 Sobic004G321300 Sobic004G321300 Sobic002G055600--Sobic004G321300 Sobic002G055600--Sobic004G189400 Sobic002G055600--Sobic002G055700 Sobic003G334600 Sobic003G334600 Sobic002G055600--Sobic003G334600 Sobic002G055600--Sobic002G183200 Sobic002G055600--Sobic004G189500
Octagon: transcription factors


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