Gene annotation
Transcriptome id Sobic.003G275300.1
Synonym DESZ, Sb03g032720, CDA1, AT-CDA1
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
cytidine/deoxycytidylate deaminase, putative, expressed
UniProt C6JRQ6 , C5XI87 , A0A109NDR8
Pfam PF00383 PF08211
Panther DB PTHR11644 PTHR11644:SF2
NCBI CDD KOG0833; Cytidine deaminase
KEGG Orthology K01489; cdd, cytidine deaminase
Gene Ontology GO:0008270; zinc ion binding GO:0009972cytidine deamination GO:0004126cytidine deaminase activity


Orthologs (automatic annotation)
TAIR AT2G19570 : cytidine deaminase 1
RAP-DB (Rice) LOC_Os01g51540.1 : cytidine/deoxycytidylate deaminase, putative, expressed
MaizeGDB (Corn) Zm00025a038945 , Zm00025a027808
Brachypodium KQK09442
Barley HORVU1Hr1G076860.1 , HORVU3Hr1G083850.1 , HORVU3Hr1G067290.1 , HORVU4Hr1G074340.1 , HORVU4Hr1G083900.1 , HORVU2Hr1G124280.1 , HORVU7Hr1G043720.1 , HORVU6Hr1G054250.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G275300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G304700 proline oxidase, mitochondrial precursor, putative, expressed K00318: PRODH, fadM, proline dehydrogenase
2 Sobic.006G113200 heavy metal associated domain containing protein, expressed -
3 Sobic.010G069200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
4 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
5 Sobic.006G121500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytochrome P450, putative, expressed -
6 Sobic.001G330700 NAD dependent epimerase/dehydratase family protein, putative, expressed -
7 Sobic.007G137700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
8 Sobic.002G243000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
9 Sobic.010G036800 expressed protein -
10 Sobic.005G196800 membrane protein, putative, expressed -
11 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
12 Sobic.001G538866 - -
13 Sobic.006G224200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
14 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
15 Sobic.002G355100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
16 Sobic.001G265400 - -
17 Sobic.004G147900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
18 Sobic.003G019200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.002G356101 - -
20 Sobic.001G449100 E2F-related protein, putative, expressed -


Gene co-expression network
sample Sobic003G275300 Sobic003G275300 Sobic001G304700 Sobic001G304700 Sobic003G275300--Sobic001G304700 Sobic006G113200 Sobic006G113200 Sobic003G275300--Sobic006G113200 Sobic010G069200 Sobic010G069200 Sobic003G275300--Sobic010G069200 Sobic007G171000 Sobic007G171000 Sobic003G275300--Sobic007G171000 Sobic006G121500 Sobic006G121500 Sobic003G275300--Sobic006G121500 Sobic001G330700 Sobic001G330700 Sobic003G275300--Sobic001G330700 Sobic007G137700 Sobic007G137700 Sobic003G275300--Sobic007G137700 Sobic002G243000 Sobic002G243000 Sobic003G275300--Sobic002G243000 Sobic010G036800 Sobic010G036800 Sobic003G275300--Sobic010G036800 Sobic005G196800 Sobic005G196800 Sobic001G304700--Sobic005G196800 Sobic002G355100 Sobic002G355100 Sobic001G304700--Sobic002G355100 Sobic002G336600 Sobic002G336600 Sobic001G304700--Sobic002G336600 Sobic004G237800 Sobic004G237800 Sobic001G304700--Sobic004G237800 Sobic003G043600 Sobic003G043600 Sobic001G304700--Sobic003G043600 Sobic003G303100 Sobic003G303100 Sobic001G304700--Sobic003G303100 Sobic001G247300 Sobic001G247300 Sobic001G304700--Sobic001G247300 Sobic002G338500 Sobic002G338500 Sobic001G304700--Sobic002G338500 Sobic003G043500 Sobic003G043500 Sobic001G304700--Sobic003G043500 Sobic009G254900 Sobic009G254900 Sobic006G113200--Sobic009G254900 Sobic010G082600 Sobic010G082600 Sobic006G113200--Sobic010G082600 Sobic005G018700 Sobic005G018700 Sobic006G113200--Sobic005G018700 Sobic006G113200--Sobic001G247300 Sobic006G113200--Sobic005G196800 Sobic001G238400 Sobic001G238400 Sobic006G113200--Sobic001G238400 Sobic002G356101 Sobic002G356101 Sobic006G113200--Sobic002G356101 Sobic004G141100 Sobic004G141100 Sobic006G113200--Sobic004G141100 Sobic006G235100 Sobic006G235100 Sobic006G113200--Sobic006G235100 Sobic006G224200 Sobic006G224200 Sobic010G069200--Sobic006G224200 Sobic010G069200--Sobic006G121500 Sobic003G423500 Sobic003G423500 Sobic010G069200--Sobic003G423500 Sobic010G069200--Sobic007G171000 Sobic004G050000 Sobic004G050000 Sobic010G069200--Sobic004G050000 Sobic003G322900 Sobic003G322900 Sobic010G069200--Sobic003G322900 Sobic004G307000 Sobic004G307000 Sobic010G069200--Sobic004G307000 Sobic002G055600 Sobic002G055600 Sobic010G069200--Sobic002G055600 Sobic010G069200--Sobic007G137700 Sobic009G155200 Sobic009G155200 Sobic007G171000--Sobic009G155200 Sobic002G195900 Sobic002G195900 Sobic007G171000--Sobic002G195900 Sobic003G429300 Sobic003G429300 Sobic007G171000--Sobic003G429300 Sobic001G119000 Sobic001G119000 Sobic007G171000--Sobic001G119000 Sobic009G177800 Sobic009G177800 Sobic007G171000--Sobic009G177800 Sobic002G359300 Sobic002G359300 Sobic007G171000--Sobic002G359300 Sobic002G046100 Sobic002G046100 Sobic007G171000--Sobic002G046100 Sobic008G111100 Sobic008G111100 Sobic007G171000--Sobic008G111100 Sobic007G171000--Sobic007G137700 Sobic001G401100 Sobic001G401100 Sobic006G121500--Sobic001G401100 Sobic006G121500--Sobic002G055600 Sobic004G148200 Sobic004G148200 Sobic006G121500--Sobic004G148200 Sobic002G367400 Sobic002G367400 Sobic006G121500--Sobic002G367400 Sobic002G055700 Sobic002G055700 Sobic006G121500--Sobic002G055700 Sobic006G121500--Sobic010G069200 Sobic004G189500 Sobic004G189500 Sobic006G121500--Sobic004G189500 Sobic006G121500--Sobic004G050000 Sobic006G240600 Sobic006G240600 Sobic006G121500--Sobic006G240600 Sobic009G152200 Sobic009G152200 Sobic001G330700--Sobic009G152200 Sobic001G147200 Sobic001G147200 Sobic001G330700--Sobic001G147200 Sobic003G019200 Sobic003G019200 Sobic001G330700--Sobic003G019200 Sobic001G399100 Sobic001G399100 Sobic001G330700--Sobic001G399100 Sobic004G058000 Sobic004G058000 Sobic001G330700--Sobic004G058000 Sobic009G111600 Sobic009G111600 Sobic001G330700--Sobic009G111600 Sobic005G117400 Sobic005G117400 Sobic001G330700--Sobic005G117400 Sobic008G161000 Sobic008G161000 Sobic001G330700--Sobic008G161000 Sobic003G061900 Sobic003G061900 Sobic001G330700--Sobic003G061900 Sobic007G137700--Sobic004G307000 Sobic007G137700--Sobic007G171000 Sobic007G137700--Sobic002G055600 Sobic007G137700--Sobic002G195900 Sobic007G137700--Sobic002G356101 Sobic002G423300 Sobic002G423300 Sobic007G137700--Sobic002G423300 Sobic007G137700--Sobic003G019200 Sobic007G137700--Sobic004G050000 Sobic007G137700--Sobic001G399100 Sobic002G243000--Sobic006G240600 Sobic003G050300 Sobic003G050300 Sobic002G243000--Sobic003G050300 Sobic009G145500 Sobic009G145500 Sobic002G243000--Sobic009G145500 Sobic008G027600 Sobic008G027600 Sobic002G243000--Sobic008G027600 Sobic004G161751 Sobic004G161751 Sobic002G243000--Sobic004G161751 Sobic003G073380 Sobic003G073380 Sobic002G243000--Sobic003G073380 Sobic001G449100 Sobic001G449100 Sobic002G243000--Sobic001G449100 Sobic002G369400 Sobic002G369400 Sobic002G243000--Sobic002G369400 Sobic002G243000--Sobic001G401100 Sobic006G101100 Sobic006G101100 Sobic010G036800--Sobic006G101100 Sobic009G069700 Sobic009G069700 Sobic010G036800--Sobic009G069700 Sobic010G036800--Sobic001G247300 Sobic003G158500 Sobic003G158500 Sobic010G036800--Sobic003G158500 Sobic010G259300 Sobic010G259300 Sobic010G036800--Sobic010G259300 Sobic010G036800--Sobic006G240600 Sobic010G078600 Sobic010G078600 Sobic010G036800--Sobic010G078600 Sobic003G092900 Sobic003G092900 Sobic010G036800--Sobic003G092900 Sobic003G313100 Sobic003G313100 Sobic010G036800--Sobic003G313100
Octagon: transcription factors


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