Gene annotation
Transcriptome id Sobic.006G113200.1
Synonym
Functional annotation heavy metal associated domain containing protein, expressed
UniProt A0A1B6PLF9
Pfam -
Panther DB PTHR22814 PTHR22814:SF158
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48290 : Heavy metal transport/detoxification superfamily protein
RAP-DB (Rice) LOC_Os04g39010.1 : heavy metal associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011064 , Zm00025a011053
Brachypodium KQJ83084
Barley HORVU2Hr1G081600.3 , HORVU2Hr1G081600.2 , HORVU2Hr1G081600.5 , HORVU2Hr1G081600.4 , HORVU2Hr1G081640.1 , HORVU2Hr1G081640.2
Wheat TraesCS2B02G350100 , TraesCS2A02G332200 , TraesCS2D02G330500 , TraesCS2B02G350000 , TraesCS2B02G349400 , TraesCS2B02G349600 , TraesCS2A02G332300 , TraesCS2A02G332100 , TraesCS2A02G332400 , TraesCS2D02G330400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G254900 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
2 Sobic.010G082600 EF hand family protein, putative, expressed -
3 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
4 Sobic.001G247300 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
5 Sobic.005G196800 membrane protein, putative, expressed -
6 Sobic.001G238400 expansin precursor, putative, expressed -
7 Sobic.002G356101 - -
8 Sobic.004G141100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
9 Sobic.006G235100 expressed protein -
10 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
11 Sobic.010G043900 expressed protein -
12 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
13 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
14 Sobic.009G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein, expressed -
15 Sobic.006G008000 O-methyltransferase, putative, expressed -
16 Sobic.003G037800 transferase family protein, putative, expressed -
17 Sobic.005G213600 Deletion of the Low Germination Stimulant 1 (LGS1) gene gives a Striga‐resistance trait in sorghum. Strigolactone precursor 18-hydroxycarlactonoic acid (18-OH-CLA) is a substrate for LGS1.(PubMedID : 34525227)@sulfotransferase domain containing protein, expressed -
18 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
19 Sobic.002G017800 expressed protein -
20 Sobic.002G243000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -


Gene co-expression network
sample Sobic006G113200 Sobic006G113200 Sobic009G254900 Sobic009G254900 Sobic006G113200--Sobic009G254900 Sobic010G082600 Sobic010G082600 Sobic006G113200--Sobic010G082600 Sobic005G018700 Sobic005G018700 Sobic006G113200--Sobic005G018700 Sobic001G247300 Sobic001G247300 Sobic006G113200--Sobic001G247300 Sobic005G196800 Sobic005G196800 Sobic006G113200--Sobic005G196800 Sobic001G238400 Sobic001G238400 Sobic006G113200--Sobic001G238400 Sobic002G356101 Sobic002G356101 Sobic006G113200--Sobic002G356101 Sobic004G141100 Sobic004G141100 Sobic006G113200--Sobic004G141100 Sobic006G235100 Sobic006G235100 Sobic006G113200--Sobic006G235100 Sobic002G367400 Sobic002G367400 Sobic009G254900--Sobic002G367400 Sobic001G466000 Sobic001G466000 Sobic009G254900--Sobic001G466000 Sobic002G004900 Sobic002G004900 Sobic009G254900--Sobic002G004900 Sobic002G353900 Sobic002G353900 Sobic009G254900--Sobic002G353900 Sobic009G254900--Sobic006G113200 Sobic002G017800 Sobic002G017800 Sobic009G254900--Sobic002G017800 Sobic010G259600 Sobic010G259600 Sobic009G254900--Sobic010G259600 Sobic002G302500 Sobic002G302500 Sobic009G254900--Sobic002G302500 Sobic009G143400 Sobic009G143400 Sobic009G254900--Sobic009G143400 Sobic010G082600--Sobic004G141100 Sobic006G008000 Sobic006G008000 Sobic010G082600--Sobic006G008000 Sobic010G082600--Sobic006G235100 Sobic009G184000 Sobic009G184000 Sobic010G082600--Sobic009G184000 Sobic009G145700 Sobic009G145700 Sobic010G082600--Sobic009G145700 Sobic003G426600 Sobic003G426600 Sobic010G082600--Sobic003G426600 Sobic002G189100 Sobic002G189100 Sobic010G082600--Sobic002G189100 Sobic002G012500 Sobic002G012500 Sobic010G082600--Sobic002G012500 Sobic003G043600 Sobic003G043600 Sobic010G082600--Sobic003G043600 Sobic002G245100 Sobic002G245100 Sobic005G018700--Sobic002G245100 Sobic005G018700--Sobic002G017800 Sobic006G103000 Sobic006G103000 Sobic005G018700--Sobic006G103000 Sobic010G185000 Sobic010G185000 Sobic005G018700--Sobic010G185000 Sobic003G429000 Sobic003G429000 Sobic005G018700--Sobic003G429000 Sobic003G037800 Sobic003G037800 Sobic005G018700--Sobic003G037800 Sobic004G340900 Sobic004G340900 Sobic005G018700--Sobic004G340900 Sobic001G050100 Sobic001G050100 Sobic005G018700--Sobic001G050100 Sobic003G192100 Sobic003G192100 Sobic005G018700--Sobic003G192100 Sobic001G247300--Sobic005G196800 Sobic001G247300--Sobic003G043600 Sobic003G092900 Sobic003G092900 Sobic001G247300--Sobic003G092900 Sobic004G237800 Sobic004G237800 Sobic001G247300--Sobic004G237800 Sobic001G247300--Sobic009G184000 Sobic006G183400 Sobic006G183400 Sobic001G247300--Sobic006G183400 Sobic002G338500 Sobic002G338500 Sobic001G247300--Sobic002G338500 Sobic007G074000 Sobic007G074000 Sobic001G247300--Sobic007G074000 Sobic003G382600 Sobic003G382600 Sobic001G247300--Sobic003G382600 Sobic005G196800--Sobic001G247300 Sobic005G196800--Sobic004G237800 Sobic001G390300 Sobic001G390300 Sobic005G196800--Sobic001G390300 Sobic005G196800--Sobic002G338500 Sobic004G321300 Sobic004G321300 Sobic005G196800--Sobic004G321300 Sobic005G196800--Sobic006G183400 Sobic005G196800--Sobic003G382600 Sobic005G196800--Sobic003G043600 Sobic002G055700 Sobic002G055700 Sobic005G196800--Sobic002G055700 Sobic001G304100 Sobic001G304100 Sobic001G238400--Sobic001G304100 Sobic001G237900 Sobic001G237900 Sobic001G238400--Sobic001G237900 Sobic003G007600 Sobic003G007600 Sobic001G238400--Sobic003G007600 Sobic009G188000 Sobic009G188000 Sobic001G238400--Sobic009G188000 Sobic004G318700 Sobic004G318700 Sobic001G238400--Sobic004G318700 Sobic003G299300 Sobic003G299300 Sobic001G238400--Sobic003G299300 Sobic004G292900 Sobic004G292900 Sobic001G238400--Sobic004G292900 Sobic006G234800 Sobic006G234800 Sobic001G238400--Sobic006G234800 Sobic006G132900 Sobic006G132900 Sobic001G238400--Sobic006G132900 Sobic010G086200 Sobic010G086200 Sobic002G356101--Sobic010G086200 Sobic002G356101--Sobic007G074000 Sobic004G065500 Sobic004G065500 Sobic002G356101--Sobic004G065500 Sobic002G356101--Sobic001G247300 Sobic009G247900 Sobic009G247900 Sobic002G356101--Sobic009G247900 Sobic003G430400 Sobic003G430400 Sobic002G356101--Sobic003G430400 Sobic002G356101--Sobic009G184000 Sobic002G356101--Sobic005G196800 Sobic009G200700 Sobic009G200700 Sobic002G356101--Sobic009G200700 Sobic002G351300 Sobic002G351300 Sobic004G141100--Sobic002G351300 Sobic004G141100--Sobic006G235100 Sobic004G141100--Sobic010G082600 Sobic007G017500 Sobic007G017500 Sobic004G141100--Sobic007G017500 Sobic006G075400 Sobic006G075400 Sobic004G141100--Sobic006G075400 Sobic008G009400 Sobic008G009400 Sobic004G141100--Sobic008G009400 Sobic006G054800 Sobic006G054800 Sobic004G141100--Sobic006G054800 Sobic004G141100--Sobic006G008000 Sobic008G066401 Sobic008G066401 Sobic004G141100--Sobic008G066401 Sobic001G502400 Sobic001G502400 Sobic006G235100--Sobic001G502400 Sobic006G007900 Sobic006G007900 Sobic006G235100--Sobic006G007900 Sobic001G313600 Sobic001G313600 Sobic006G235100--Sobic001G313600 Sobic006G235100--Sobic009G184000 Sobic005G107900 Sobic005G107900 Sobic006G235100--Sobic005G107900 Sobic003G442100 Sobic003G442100 Sobic006G235100--Sobic003G442100 Sobic006G235100--Sobic004G141100 Sobic006G235100--Sobic006G075400 Sobic003G432700 Sobic003G432700 Sobic006G235100--Sobic003G432700
Octagon: transcription factors


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