Gene annotation
Transcriptome id Sobic.004G147900.1
Synonym Sb04g019630
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
Cupin domain containing protein, expressed
UniProt C5XRU5
Pfam PF07883
Panther DB PTHR31238 PTHR31238:SF31
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G39160 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os02g29000.1 : Cupin domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G057100 expressed protein -
2 Sobic.003G035700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
3 Sobic.001G290400 no apical meristem protein, putative, expressed -
4 Sobic.009G155200 ZOS5-08 - C2H2 zinc finger protein, expressed -
5 Sobic.003G423500 SbGlu1 promoter sequences(-2000 bp to -1 bp) bound and upregulated by SbSTOP1(PubMedID : 30387379)@"beta-1,3-glucanase, localized throuout cytoplasm and nuclei with no specific subcellular localization"(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
6 Sobic.004G051166 - -
7 Sobic.003G158500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
8 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -
9 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
10 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
11 Sobic.004G286600 Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed -
12 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
13 Sobic.004G053200 Cupin domain containing protein, expressed -
14 Sobic.002G036150 - -
15 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
16 Sobic.004G311500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR12 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
17 Sobic.003G300800 GA inactivating enzyme(PubMedID : 24151305)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulation in phyB-1 mutant(PubMedID : 26893475)@Expressed in older stem(PubMedID : 28649278)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
18 Sobic.010G228000 Protein kinase domain containing protein, expressed -
19 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
20 Sobic.004G084100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G147900 Sobic004G147900 Sobic007G057100 Sobic007G057100 Sobic004G147900--Sobic007G057100 Sobic003G035700 Sobic003G035700 Sobic004G147900--Sobic003G035700 Sobic001G290400 Sobic001G290400 Sobic004G147900--Sobic001G290400 Sobic009G155200 Sobic009G155200 Sobic004G147900--Sobic009G155200 Sobic003G423500 Sobic003G423500 Sobic004G147900--Sobic003G423500 Sobic004G051166 Sobic004G051166 Sobic004G147900--Sobic004G051166 Sobic003G158500 Sobic003G158500 Sobic004G147900--Sobic003G158500 Sobic001G513700 Sobic001G513700 Sobic004G147900--Sobic001G513700 Sobic007G171000 Sobic007G171000 Sobic004G147900--Sobic007G171000 Sobic001G489600 Sobic001G489600 Sobic007G057100--Sobic001G489600 Sobic002G203000 Sobic002G203000 Sobic007G057100--Sobic002G203000 Sobic007G057100--Sobic001G513700 Sobic006G095600 Sobic006G095600 Sobic007G057100--Sobic006G095600 Sobic004G286600 Sobic004G286600 Sobic007G057100--Sobic004G286600 Sobic001G077700 Sobic001G077700 Sobic007G057100--Sobic001G077700 Sobic001G051600 Sobic001G051600 Sobic007G057100--Sobic001G051600 Sobic007G057100--Sobic004G147900 Sobic001G473900 Sobic001G473900 Sobic007G057100--Sobic001G473900 Sobic003G035700--Sobic003G423500 Sobic003G035700--Sobic004G147900 Sobic010G200700 Sobic010G200700 Sobic003G035700--Sobic010G200700 Sobic004G195300 Sobic004G195300 Sobic003G035700--Sobic004G195300 Sobic004G297200 Sobic004G297200 Sobic003G035700--Sobic004G297200 Sobic010G078600 Sobic010G078600 Sobic003G035700--Sobic010G078600 Sobic003G035700--Sobic001G290400 Sobic003G012800 Sobic003G012800 Sobic003G035700--Sobic003G012800 Sobic001G482700 Sobic001G482700 Sobic003G035700--Sobic001G482700 Sobic002G118600 Sobic002G118600 Sobic001G290400--Sobic002G118600 Sobic002G294700 Sobic002G294700 Sobic001G290400--Sobic002G294700 Sobic001G051800 Sobic001G051800 Sobic001G290400--Sobic001G051800 Sobic004G053200 Sobic004G053200 Sobic001G290400--Sobic004G053200 Sobic003G338900 Sobic003G338900 Sobic001G290400--Sobic003G338900 Sobic001G290400--Sobic001G473900 Sobic010G228000 Sobic010G228000 Sobic001G290400--Sobic010G228000 Sobic005G139700 Sobic005G139700 Sobic001G290400--Sobic005G139700 Sobic001G538866 Sobic001G538866 Sobic001G290400--Sobic001G538866 Sobic009G155200--Sobic007G171000 Sobic001G119000 Sobic001G119000 Sobic009G155200--Sobic001G119000 Sobic001G054400 Sobic001G054400 Sobic009G155200--Sobic001G054400 Sobic002G359300 Sobic002G359300 Sobic009G155200--Sobic002G359300 Sobic008G111100 Sobic008G111100 Sobic009G155200--Sobic008G111100 Sobic009G177800 Sobic009G177800 Sobic009G155200--Sobic009G177800 Sobic005G103300 Sobic005G103300 Sobic009G155200--Sobic005G103300 Sobic009G036700 Sobic009G036700 Sobic009G155200--Sobic009G036700 Sobic001G040200 Sobic001G040200 Sobic009G155200--Sobic001G040200 Sobic003G423500--Sobic003G035700 Sobic010G069200 Sobic010G069200 Sobic003G423500--Sobic010G069200 Sobic003G423500--Sobic001G119000 Sobic003G423500--Sobic001G054400 Sobic003G423500--Sobic007G171000 Sobic003G423500--Sobic010G078600 Sobic003G423500--Sobic004G195300 Sobic003G423500--Sobic004G147900 Sobic003G423500--Sobic009G155200 Sobic004G051166--Sobic001G051600 Sobic004G051166--Sobic001G482700 Sobic004G051166--Sobic001G473900 Sobic001G476400 Sobic001G476400 Sobic004G051166--Sobic001G476400 Sobic004G051166--Sobic007G057100 Sobic004G051166--Sobic006G095600 Sobic004G051166--Sobic001G489600 Sobic004G280900 Sobic004G280900 Sobic004G051166--Sobic004G280900 Sobic010G076600 Sobic010G076600 Sobic004G051166--Sobic010G076600 Sobic003G158500--Sobic001G040200 Sobic002G140300 Sobic002G140300 Sobic003G158500--Sobic002G140300 Sobic002G245100 Sobic002G245100 Sobic003G158500--Sobic002G245100 Sobic010G259300 Sobic010G259300 Sobic003G158500--Sobic010G259300 Sobic001G407800 Sobic001G407800 Sobic003G158500--Sobic001G407800 Sobic002G356101 Sobic002G356101 Sobic003G158500--Sobic002G356101 Sobic007G151100 Sobic007G151100 Sobic003G158500--Sobic007G151100 Sobic003G430400 Sobic003G430400 Sobic003G158500--Sobic003G430400 Sobic003G158500--Sobic001G538866 Sobic008G177800 Sobic008G177800 Sobic001G513700--Sobic008G177800 Sobic001G513700--Sobic007G151100 Sobic002G036100 Sobic002G036100 Sobic001G513700--Sobic002G036100 Sobic001G516600 Sobic001G516600 Sobic001G513700--Sobic001G516600 Sobic001G532200 Sobic001G532200 Sobic001G513700--Sobic001G532200 Sobic006G231100 Sobic006G231100 Sobic001G513700--Sobic006G231100 Sobic001G513700--Sobic002G294700 Sobic001G513700--Sobic007G057100 Sobic006G089300 Sobic006G089300 Sobic001G513700--Sobic006G089300 Sobic007G171000--Sobic009G155200 Sobic002G195900 Sobic002G195900 Sobic007G171000--Sobic002G195900 Sobic003G429300 Sobic003G429300 Sobic007G171000--Sobic003G429300 Sobic007G171000--Sobic001G119000 Sobic007G171000--Sobic009G177800 Sobic007G171000--Sobic002G359300 Sobic002G046100 Sobic002G046100 Sobic007G171000--Sobic002G046100 Sobic007G171000--Sobic008G111100 Sobic007G137700 Sobic007G137700 Sobic007G171000--Sobic007G137700
Octagon: transcription factors


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