Gene annotation
Transcriptome id Sobic.001G227500.1
Synonym Sb01g019940
Functional annotation expressed protein
UniProt A0A1Z5S6W7
Pfam PF04576
Panther DB PTHR31422 PTHR31422:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G13630 : Protein of unknown function, DUF593
RAP-DB (Rice) LOC_Os04g24610.2 : expressed protein
MaizeGDB (Corn) Zm00025a017684 , Zm00025a006687 , Zm00025a015789
Brachypodium -
Barley HORVU4Hr1G041430.4 , HORVU4Hr1G041430.6 , HORVU4Hr1G041430.7 , HORVU4Hr1G041430.1 , HORVU2Hr1G066690.11 , HORVU2Hr1G066690.10 , HORVU4Hr1G041430.5 , HORVU4Hr1G041430.2 , HORVU4Hr1G041430.3 , HORVU4Hr1G041430.8 , HORVU4Hr1G041430.9 , HORVU2Hr1G066690.12 , HORVU2Hr1G066690.9 , HORVU2Hr1G066690.8 , HORVU2Hr1G066690.1 , HORVU2Hr1G066690.3 , HORVU2Hr1G066690.2 , HORVU2Hr1G066690.5 , HORVU2Hr1G066690.4 , HORVU2Hr1G066690.7 , HORVU2Hr1G066690.6
Wheat TraesCS4A02G159000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G026900 cytidine deaminase, putative, expressed -
2 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
3 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
4 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
5 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
6 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
7 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase
8 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
9 Sobic.002G083266 - K00326: cytochrome-b5 reductase
10 Sobic.009G111600 expressed protein -
11 Sobic.006G264300 GA18008-PA, putative, expressed -
12 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
13 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
14 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
15 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
16 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
17 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
18 Sobic.001G330700 NAD dependent epimerase/dehydratase family protein, putative, expressed -
19 Sobic.004G276100 expressed protein -
20 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic001G227500 Sobic001G227500 Sobic001G026900 Sobic001G026900 Sobic001G227500--Sobic001G026900 Sobic004G050000 Sobic004G050000 Sobic001G227500--Sobic004G050000 Sobic004G248800 Sobic004G248800 Sobic001G227500--Sobic004G248800 Sobic008G179500 Sobic008G179500 Sobic001G227500--Sobic008G179500 Sobic003G253000 Sobic003G253000 Sobic001G227500--Sobic003G253000 Sobic002G267500 Sobic002G267500 Sobic001G227500--Sobic002G267500 Sobic002G264400 Sobic002G264400 Sobic001G227500--Sobic002G264400 Sobic001G236300 Sobic001G236300 Sobic001G227500--Sobic001G236300 Sobic002G083266 Sobic002G083266 Sobic001G227500--Sobic002G083266 Sobic001G026900--Sobic001G227500 Sobic002G090200 Sobic002G090200 Sobic001G026900--Sobic002G090200 Sobic001G026900--Sobic004G050000 Sobic004G276100 Sobic004G276100 Sobic001G026900--Sobic004G276100 Sobic004G277000 Sobic004G277000 Sobic001G026900--Sobic004G277000 Sobic001G026900--Sobic002G083266 Sobic001G026900--Sobic002G267500 Sobic001G026900--Sobic008G179500 Sobic002G249000 Sobic002G249000 Sobic001G026900--Sobic002G249000 Sobic009G043600 Sobic009G043600 Sobic004G050000--Sobic009G043600 Sobic001G066000 Sobic001G066000 Sobic004G050000--Sobic001G066000 Sobic004G049900 Sobic004G049900 Sobic004G050000--Sobic004G049900 Sobic004G050000--Sobic004G277000 Sobic004G050000--Sobic002G267500 Sobic006G121500 Sobic006G121500 Sobic004G050000--Sobic006G121500 Sobic004G050000--Sobic002G090200 Sobic009G177800 Sobic009G177800 Sobic004G050000--Sobic009G177800 Sobic006G108400 Sobic006G108400 Sobic004G050000--Sobic006G108400 Sobic006G141500 Sobic006G141500 Sobic004G248800--Sobic006G141500 Sobic001G529000 Sobic001G529000 Sobic004G248800--Sobic001G529000 Sobic010G039800 Sobic010G039800 Sobic004G248800--Sobic010G039800 Sobic004G248800--Sobic003G253000 Sobic004G293700 Sobic004G293700 Sobic004G248800--Sobic004G293700 Sobic008G161800 Sobic008G161800 Sobic004G248800--Sobic008G161800 Sobic002G263800 Sobic002G263800 Sobic004G248800--Sobic002G263800 Sobic002G218000 Sobic002G218000 Sobic004G248800--Sobic002G218000 Sobic003G249800 Sobic003G249800 Sobic004G248800--Sobic003G249800 Sobic008G179500--Sobic004G276100 Sobic009G111600 Sobic009G111600 Sobic008G179500--Sobic009G111600 Sobic001G022900 Sobic001G022900 Sobic008G179500--Sobic001G022900 Sobic008G179500--Sobic004G277000 Sobic003G333400 Sobic003G333400 Sobic008G179500--Sobic003G333400 Sobic008G179500--Sobic002G083266 Sobic008G179500--Sobic004G050000 Sobic004G301400 Sobic004G301400 Sobic008G179500--Sobic004G301400 Sobic001G399100 Sobic001G399100 Sobic008G179500--Sobic001G399100 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic003G253000--Sobic006G108400 Sobic001G281400 Sobic001G281400 Sobic002G267500--Sobic001G281400 Sobic002G267500--Sobic004G272800 Sobic002G267500--Sobic002G046100 Sobic002G267500--Sobic003G253000 Sobic010G149300 Sobic010G149300 Sobic002G267500--Sobic010G149300 Sobic002G267500--Sobic002G345300 Sobic002G267500--Sobic001G459200 Sobic009G143400 Sobic009G143400 Sobic002G267500--Sobic009G143400 Sobic006G173900 Sobic006G173900 Sobic002G267500--Sobic006G173900 Sobic006G264300 Sobic006G264300 Sobic002G264400--Sobic006G264300 Sobic002G264400--Sobic004G293700 Sobic002G264400--Sobic002G267500 Sobic002G180600 Sobic002G180600 Sobic002G264400--Sobic002G180600 Sobic002G264400--Sobic003G253000 Sobic002G202300 Sobic002G202300 Sobic002G264400--Sobic002G202300 Sobic010G253800 Sobic010G253800 Sobic002G264400--Sobic010G253800 Sobic005G034400 Sobic005G034400 Sobic002G264400--Sobic005G034400 Sobic003G075500 Sobic003G075500 Sobic002G264400--Sobic003G075500 Sobic003G367451 Sobic003G367451 Sobic001G236300--Sobic003G367451 Sobic004G224900 Sobic004G224900 Sobic001G236300--Sobic004G224900 Sobic007G114200 Sobic007G114200 Sobic001G236300--Sobic007G114200 Sobic001G236300--Sobic004G272800 Sobic001G058100 Sobic001G058100 Sobic001G236300--Sobic001G058100 Sobic001G132100 Sobic001G132100 Sobic001G236300--Sobic001G132100 Sobic006G252200 Sobic006G252200 Sobic001G236300--Sobic006G252200 Sobic004G335000 Sobic004G335000 Sobic001G236300--Sobic004G335000 Sobic007G045600 Sobic007G045600 Sobic001G236300--Sobic007G045600 Sobic002G083266--Sobic003G367451 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic002G083266--Sobic009G111600 Sobic001G224400 Sobic001G224400 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic002G083266--Sobic004G272800
Octagon: transcription factors


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