Gene annotation
Transcriptome id Sobic.001G026900.2,Sobic.001G026900.1
Synonym
Functional annotation cytidine deaminase, putative, expressed
UniProt A0A1B6QH21
Pfam PF00383
Panther DB PTHR11079 PTHR11079:SF90
NCBI CDD KOG1018; Cytosine deaminase FCY1 and related enzymes
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G28050 : Cytidine/deoxycytidylate deaminase family protein
RAP-DB (Rice) LOC_Os03g61810.1 : tRNA-specific adenosine deaminase, putative, expressed
MaizeGDB (Corn) Zm00025a013601 , Zm00025a008898 , Zm00025a045496
Brachypodium KQK12288
Barley HORVU5Hr1G117680.10 , HORVU5Hr1G117680.11 , HORVU5Hr1G117680.12 , HORVU5Hr1G117680.13 , HORVU5Hr1G117480.4 , HORVU5Hr1G117480.1 , HORVU5Hr1G117480.2 , HORVU5Hr1G117480.3 , HORVU5Hr1G117680.7 , HORVU5Hr1G117680.2 , HORVU5Hr1G117680.3 , HORVU5Hr1G117680.1 , HORVU5Hr1G117680.8 , HORVU5Hr1G117680.9
Wheat TraesCS5D02G513700 , TraesCS4A02G358800 , TraesCS5D02G513700 , TraesCS5B02G513300 , TraesCS5D02G513900 , TraesCS5D02G513800 , TraesCS5B02G513300 , TraesCS5B02G513200 , TraesCS5B02G513200 , TraesCS5B02G513200 , TraesCS5D02G513700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G227500 expressed protein -
2 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -
3 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
4 Sobic.004G276100 expressed protein -
5 Sobic.004G277000 purine permease, putative, expressed -
6 Sobic.002G083266 - K00326: cytochrome-b5 reductase
7 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
9 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
10 Sobic.009G149400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K15849: PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
11 Sobic.006G220900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
12 Sobic.001G058100 thioredoxin, putative, expressed -
13 Sobic.006G264300 GA18008-PA, putative, expressed -
14 Sobic.006G096400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
15 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase
16 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
17 Sobic.009G111600 expressed protein -
18 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.004G205000 cytosolic Fe-S cluster assembling factor NBP35, putative, expressed -
20 Sobic.010G224200 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic001G026900 Sobic001G026900 Sobic001G227500 Sobic001G227500 Sobic001G026900--Sobic001G227500 Sobic002G090200 Sobic002G090200 Sobic001G026900--Sobic002G090200 Sobic004G050000 Sobic004G050000 Sobic001G026900--Sobic004G050000 Sobic004G276100 Sobic004G276100 Sobic001G026900--Sobic004G276100 Sobic004G277000 Sobic004G277000 Sobic001G026900--Sobic004G277000 Sobic002G083266 Sobic002G083266 Sobic001G026900--Sobic002G083266 Sobic002G267500 Sobic002G267500 Sobic001G026900--Sobic002G267500 Sobic008G179500 Sobic008G179500 Sobic001G026900--Sobic008G179500 Sobic002G249000 Sobic002G249000 Sobic001G026900--Sobic002G249000 Sobic001G227500--Sobic001G026900 Sobic001G227500--Sobic004G050000 Sobic004G248800 Sobic004G248800 Sobic001G227500--Sobic004G248800 Sobic001G227500--Sobic008G179500 Sobic003G253000 Sobic003G253000 Sobic001G227500--Sobic003G253000 Sobic001G227500--Sobic002G267500 Sobic002G264400 Sobic002G264400 Sobic001G227500--Sobic002G264400 Sobic001G236300 Sobic001G236300 Sobic001G227500--Sobic001G236300 Sobic001G227500--Sobic002G083266 Sobic006G218300 Sobic006G218300 Sobic002G090200--Sobic006G218300 Sobic002G090200--Sobic004G050000 Sobic004G074500 Sobic004G074500 Sobic002G090200--Sobic004G074500 Sobic006G165400 Sobic006G165400 Sobic002G090200--Sobic006G165400 Sobic002G090200--Sobic001G026900 Sobic004G308000 Sobic004G308000 Sobic002G090200--Sobic004G308000 Sobic002G090200--Sobic004G277000 Sobic003G215800 Sobic003G215800 Sobic002G090200--Sobic003G215800 Sobic002G090200--Sobic002G249000 Sobic009G043600 Sobic009G043600 Sobic004G050000--Sobic009G043600 Sobic001G066000 Sobic001G066000 Sobic004G050000--Sobic001G066000 Sobic004G049900 Sobic004G049900 Sobic004G050000--Sobic004G049900 Sobic004G050000--Sobic004G277000 Sobic004G050000--Sobic002G267500 Sobic006G121500 Sobic006G121500 Sobic004G050000--Sobic006G121500 Sobic004G050000--Sobic002G090200 Sobic009G177800 Sobic009G177800 Sobic004G050000--Sobic009G177800 Sobic006G108400 Sobic006G108400 Sobic004G050000--Sobic006G108400 Sobic004G276100--Sobic008G179500 Sobic004G272800 Sobic004G272800 Sobic004G276100--Sobic004G272800 Sobic007G078100 Sobic007G078100 Sobic004G276100--Sobic007G078100 Sobic009G111600 Sobic009G111600 Sobic004G276100--Sobic009G111600 Sobic002G329100 Sobic002G329100 Sobic004G276100--Sobic002G329100 Sobic004G276100--Sobic004G050000 Sobic004G276100--Sobic006G108400 Sobic004G276100--Sobic009G043600 Sobic004G284500 Sobic004G284500 Sobic004G276100--Sobic004G284500 Sobic004G277000--Sobic004G050000 Sobic004G277000--Sobic009G043600 Sobic004G277000--Sobic002G249000 Sobic009G003900 Sobic009G003900 Sobic004G277000--Sobic009G003900 Sobic004G277000--Sobic002G267500 Sobic006G173900 Sobic006G173900 Sobic004G277000--Sobic006G173900 Sobic004G277000--Sobic004G276100 Sobic004G277000--Sobic009G177800 Sobic004G277000--Sobic002G264400 Sobic003G367451 Sobic003G367451 Sobic002G083266--Sobic003G367451 Sobic006G264300 Sobic006G264300 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic002G083266--Sobic009G111600 Sobic001G224400 Sobic001G224400 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic002G083266--Sobic004G272800 Sobic001G281400 Sobic001G281400 Sobic002G267500--Sobic001G281400 Sobic002G267500--Sobic004G272800 Sobic002G046100 Sobic002G046100 Sobic002G267500--Sobic002G046100 Sobic002G267500--Sobic003G253000 Sobic010G149300 Sobic010G149300 Sobic002G267500--Sobic010G149300 Sobic002G345300 Sobic002G345300 Sobic002G267500--Sobic002G345300 Sobic001G459200 Sobic001G459200 Sobic002G267500--Sobic001G459200 Sobic009G143400 Sobic009G143400 Sobic002G267500--Sobic009G143400 Sobic002G267500--Sobic006G173900 Sobic008G179500--Sobic004G276100 Sobic008G179500--Sobic009G111600 Sobic001G022900 Sobic001G022900 Sobic008G179500--Sobic001G022900 Sobic008G179500--Sobic004G277000 Sobic003G333400 Sobic003G333400 Sobic008G179500--Sobic003G333400 Sobic008G179500--Sobic002G083266 Sobic008G179500--Sobic004G050000 Sobic004G301400 Sobic004G301400 Sobic008G179500--Sobic004G301400 Sobic001G399100 Sobic001G399100 Sobic008G179500--Sobic001G399100 Sobic002G249000--Sobic004G277000 Sobic001G010400 Sobic001G010400 Sobic002G249000--Sobic001G010400 Sobic002G249000--Sobic004G050000 Sobic002G249000--Sobic009G003900 Sobic010G224200 Sobic010G224200 Sobic002G249000--Sobic010G224200 Sobic005G117400 Sobic005G117400 Sobic002G249000--Sobic005G117400 Sobic010G176700 Sobic010G176700 Sobic002G249000--Sobic010G176700 Sobic002G180600 Sobic002G180600 Sobic002G249000--Sobic002G180600 Sobic004G307000 Sobic004G307000 Sobic002G249000--Sobic004G307000
Octagon: transcription factors


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