Gene annotation
Transcriptome id Sobic.006G220900.2,Sobic.006G220900.3,Sobic.006G220900.1
Synonym Sb06g029030, ATG8C
Functional annotation autophagy-related protein, putative, expressed
UniProt A0A1B6PNA0 , A0A1B6PNA2
Pfam PF04110
Panther DB PTHR10969 PTHR10969:SF43
NCBI CDD KOG1654; Microtubule-associated anchor protein involved in autophagy and membrane trafficking
KEGG Orthology K08341; GABARAP, ATG8, GABA(A) receptor-associated protein
Gene Ontology GO:0005737; cytoplasm GO:0000045autophagosome assembly


Orthologs (automatic annotation)
TAIR AT1G62040 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os08g09240.1 : autophagy-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a009714 , Zm00025a057061
Brachypodium -
Barley -
Wheat TraesCS2A02G468300
Populus -


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cDNA sequences
Sobic.006G220900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G058100 thioredoxin, putative, expressed -
2 Sobic.001G289400 expressed protein -
3 Sobic.001G026900 cytidine deaminase, putative, expressed -
4 Sobic.004G276100 expressed protein -
5 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
6 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
7 Sobic.002G083266 - K00326: cytochrome-b5 reductase
8 Sobic.004G301400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K08331: autophagy-related protein 13
9 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
10 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
11 Sobic.001G227500 expressed protein -
12 Sobic.002G257400 peptidase, T1 family, putative, expressed -
13 Sobic.009G139800 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
14 Sobic.001G233532 - K10576: UBE2H, ubiquitin-conjugating enzyme E2 H
15 Sobic.002G261900 arabinogalactan protein, putative, expressed -
16 Sobic.006G096400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
17 Sobic.004G204800 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
18 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
19 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
20 Sobic.001G298300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@autophagy-related protein 3, putative, expressed K08343: ubiquitin-like-conjugating enzyme ATG3


Gene co-expression network
sample Sobic006G220900 Sobic006G220900 Sobic001G058100 Sobic001G058100 Sobic006G220900--Sobic001G058100 Sobic001G289400 Sobic001G289400 Sobic006G220900--Sobic001G289400 Sobic001G026900 Sobic001G026900 Sobic006G220900--Sobic001G026900 Sobic004G276100 Sobic004G276100 Sobic006G220900--Sobic004G276100 Sobic004G335000 Sobic004G335000 Sobic006G220900--Sobic004G335000 Sobic008G179500 Sobic008G179500 Sobic006G220900--Sobic008G179500 Sobic002G083266 Sobic002G083266 Sobic006G220900--Sobic002G083266 Sobic004G301400 Sobic004G301400 Sobic006G220900--Sobic004G301400 Sobic007G096700 Sobic007G096700 Sobic006G220900--Sobic007G096700 Sobic001G236300 Sobic001G236300 Sobic001G058100--Sobic001G236300 Sobic001G058100--Sobic004G335000 Sobic002G257400 Sobic002G257400 Sobic001G058100--Sobic002G257400 Sobic006G252200 Sobic006G252200 Sobic001G058100--Sobic006G252200 Sobic010G044200 Sobic010G044200 Sobic001G058100--Sobic010G044200 Sobic001G058100--Sobic001G289400 Sobic003G104700 Sobic003G104700 Sobic001G058100--Sobic003G104700 Sobic001G058100--Sobic006G220900 Sobic001G058100--Sobic002G083266 Sobic001G289400--Sobic001G058100 Sobic001G289400--Sobic006G220900 Sobic010G168200 Sobic010G168200 Sobic001G289400--Sobic010G168200 Sobic001G233532 Sobic001G233532 Sobic001G289400--Sobic001G233532 Sobic001G010700 Sobic001G010700 Sobic001G289400--Sobic001G010700 Sobic004G204800 Sobic004G204800 Sobic001G289400--Sobic004G204800 Sobic009G077400 Sobic009G077400 Sobic001G289400--Sobic009G077400 Sobic001G289400--Sobic007G096700 Sobic003G043400 Sobic003G043400 Sobic001G289400--Sobic003G043400 Sobic001G227500 Sobic001G227500 Sobic001G026900--Sobic001G227500 Sobic002G090200 Sobic002G090200 Sobic001G026900--Sobic002G090200 Sobic004G050000 Sobic004G050000 Sobic001G026900--Sobic004G050000 Sobic001G026900--Sobic004G276100 Sobic004G277000 Sobic004G277000 Sobic001G026900--Sobic004G277000 Sobic001G026900--Sobic002G083266 Sobic002G267500 Sobic002G267500 Sobic001G026900--Sobic002G267500 Sobic001G026900--Sobic008G179500 Sobic002G249000 Sobic002G249000 Sobic001G026900--Sobic002G249000 Sobic004G276100--Sobic008G179500 Sobic004G272800 Sobic004G272800 Sobic004G276100--Sobic004G272800 Sobic007G078100 Sobic007G078100 Sobic004G276100--Sobic007G078100 Sobic009G111600 Sobic009G111600 Sobic004G276100--Sobic009G111600 Sobic002G329100 Sobic002G329100 Sobic004G276100--Sobic002G329100 Sobic004G276100--Sobic004G050000 Sobic006G108400 Sobic006G108400 Sobic004G276100--Sobic006G108400 Sobic009G043600 Sobic009G043600 Sobic004G276100--Sobic009G043600 Sobic004G284500 Sobic004G284500 Sobic004G276100--Sobic004G284500 Sobic002G428200 Sobic002G428200 Sobic004G335000--Sobic002G428200 Sobic007G176200 Sobic007G176200 Sobic004G335000--Sobic007G176200 Sobic004G335000--Sobic001G010700 Sobic004G335000--Sobic002G257400 Sobic004G335000--Sobic006G252200 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic004G335000--Sobic001G058100 Sobic007G045600 Sobic007G045600 Sobic004G335000--Sobic007G045600 Sobic008G179500--Sobic004G276100 Sobic008G179500--Sobic009G111600 Sobic001G022900 Sobic001G022900 Sobic008G179500--Sobic001G022900 Sobic008G179500--Sobic004G277000 Sobic003G333400 Sobic003G333400 Sobic008G179500--Sobic003G333400 Sobic008G179500--Sobic002G083266 Sobic008G179500--Sobic004G050000 Sobic008G179500--Sobic004G301400 Sobic001G399100 Sobic001G399100 Sobic008G179500--Sobic001G399100 Sobic003G367451 Sobic003G367451 Sobic002G083266--Sobic003G367451 Sobic006G264300 Sobic006G264300 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic002G083266--Sobic009G111600 Sobic001G224400 Sobic001G224400 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic002G083266--Sobic004G272800 Sobic004G301400--Sobic003G367451 Sobic004G301400--Sobic009G111600 Sobic004G301400--Sobic001G236300 Sobic004G301400--Sobic002G083266 Sobic004G301400--Sobic004G276100 Sobic004G301400--Sobic008G179500 Sobic001G403700 Sobic001G403700 Sobic004G301400--Sobic001G403700 Sobic004G301400--Sobic004G272800 Sobic004G130900 Sobic004G130900 Sobic004G301400--Sobic004G130900 Sobic009G198500 Sobic009G198500 Sobic007G096700--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic007G096700--Sobic004G327300 Sobic009G122100 Sobic009G122100 Sobic007G096700--Sobic009G122100 Sobic001G501200 Sobic001G501200 Sobic007G096700--Sobic001G501200 Sobic001G005900 Sobic001G005900 Sobic007G096700--Sobic001G005900 Sobic002G400000 Sobic002G400000 Sobic007G096700--Sobic002G400000 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic004G300900 Sobic004G300900 Sobic007G096700--Sobic004G300900
Octagon: transcription factors


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