Gene annotation
Transcriptome id Sobic.004G301400.1
Synonym Sb04g033470
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XS44
Pfam PF10033
Panther DB PTHR13430 PTHR13430:SF5
NCBI CDD KOG4573; Phosphoprotein involved in cytoplasm to vacuole targeting and autophagy
KEGG Orthology K08331; autophagy-related protein 13
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49590 : Autophagy-related protein 13
RAP-DB (Rice) LOC_Os02g43040.1 : expressed protein
MaizeGDB (Corn) Zm00025a020952 , Zm00025a032150 , Zm00025a056610 , Zm00025a010411
Brachypodium KQK00533
Barley HORVU6Hr1G061020.3 , HORVU6Hr1G061020.2 , HORVU6Hr1G061020.6 , HORVU6Hr1G061020.5
Wheat TraesCS6D02G221200 , TraesCS6A02G238900 , TraesCS6A02G238900 , TraesCS6B02G285600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
2 Sobic.009G111600 expressed protein -
3 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
4 Sobic.002G083266 - K00326: cytochrome-b5 reductase
5 Sobic.004G276100 expressed protein -
6 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
7 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
8 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
9 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
10 Sobic.002G296300 expressed protein -
11 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
13 Sobic.007G195100 peptidase, T1 family, putative, expressed K02732: 20S proteasome subunit beta 6
14 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
16 Sobic.001G158500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LSD1 zinc finger domain containing protein, expressed -
17 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
18 Sobic.004G284500 ORM1, putative, expressed -
19 Sobic.001G399100 peroxisomal biogenesis factor 11, putative, expressed -
20 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -


Gene co-expression network
sample Sobic004G301400 Sobic004G301400 Sobic003G367451 Sobic003G367451 Sobic004G301400--Sobic003G367451 Sobic009G111600 Sobic009G111600 Sobic004G301400--Sobic009G111600 Sobic001G236300 Sobic001G236300 Sobic004G301400--Sobic001G236300 Sobic002G083266 Sobic002G083266 Sobic004G301400--Sobic002G083266 Sobic004G276100 Sobic004G276100 Sobic004G301400--Sobic004G276100 Sobic008G179500 Sobic008G179500 Sobic004G301400--Sobic008G179500 Sobic001G403700 Sobic001G403700 Sobic004G301400--Sobic001G403700 Sobic004G272800 Sobic004G272800 Sobic004G301400--Sobic004G272800 Sobic004G130900 Sobic004G130900 Sobic004G301400--Sobic004G130900 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic001G433400 Sobic001G433400 Sobic003G367451--Sobic001G433400 Sobic003G367451--Sobic004G272800 Sobic003G367451--Sobic002G083266 Sobic003G367451--Sobic004G130900 Sobic003G253000 Sobic003G253000 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic004G284500 Sobic004G284500 Sobic009G111600--Sobic004G284500 Sobic009G111600--Sobic001G403700 Sobic009G111600--Sobic004G276100 Sobic009G111600--Sobic008G179500 Sobic009G111600--Sobic002G083266 Sobic009G111600--Sobic003G367451 Sobic010G213400 Sobic010G213400 Sobic009G111600--Sobic010G213400 Sobic009G111600--Sobic004G272800 Sobic001G399100 Sobic001G399100 Sobic009G111600--Sobic001G399100 Sobic001G236300--Sobic003G367451 Sobic004G224900 Sobic004G224900 Sobic001G236300--Sobic004G224900 Sobic001G236300--Sobic007G114200 Sobic001G236300--Sobic004G272800 Sobic001G058100 Sobic001G058100 Sobic001G236300--Sobic001G058100 Sobic001G132100 Sobic001G132100 Sobic001G236300--Sobic001G132100 Sobic006G252200 Sobic006G252200 Sobic001G236300--Sobic006G252200 Sobic004G335000 Sobic004G335000 Sobic001G236300--Sobic004G335000 Sobic007G045600 Sobic007G045600 Sobic001G236300--Sobic007G045600 Sobic002G083266--Sobic003G367451 Sobic006G264300 Sobic006G264300 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic002G083266--Sobic009G111600 Sobic001G224400 Sobic001G224400 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic002G083266--Sobic010G213400 Sobic002G083266--Sobic004G272800 Sobic004G276100--Sobic008G179500 Sobic004G276100--Sobic004G272800 Sobic007G078100 Sobic007G078100 Sobic004G276100--Sobic007G078100 Sobic004G276100--Sobic009G111600 Sobic002G329100 Sobic002G329100 Sobic004G276100--Sobic002G329100 Sobic004G050000 Sobic004G050000 Sobic004G276100--Sobic004G050000 Sobic006G108400 Sobic006G108400 Sobic004G276100--Sobic006G108400 Sobic009G043600 Sobic009G043600 Sobic004G276100--Sobic009G043600 Sobic004G276100--Sobic004G284500 Sobic008G179500--Sobic004G276100 Sobic008G179500--Sobic009G111600 Sobic001G022900 Sobic001G022900 Sobic008G179500--Sobic001G022900 Sobic004G277000 Sobic004G277000 Sobic008G179500--Sobic004G277000 Sobic003G333400 Sobic003G333400 Sobic008G179500--Sobic003G333400 Sobic008G179500--Sobic002G083266 Sobic008G179500--Sobic004G050000 Sobic008G179500--Sobic004G301400 Sobic008G179500--Sobic001G399100 Sobic001G403700--Sobic009G111600 Sobic001G403700--Sobic004G284500 Sobic002G078400 Sobic002G078400 Sobic001G403700--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic001G403700--Sobic006G182100 Sobic002G296300 Sobic002G296300 Sobic001G403700--Sobic002G296300 Sobic003G248600 Sobic003G248600 Sobic001G403700--Sobic003G248600 Sobic008G132800 Sobic008G132800 Sobic001G403700--Sobic008G132800 Sobic002G214900 Sobic002G214900 Sobic001G403700--Sobic002G214900 Sobic001G403700--Sobic010G213400 Sobic002G267500 Sobic002G267500 Sobic004G272800--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G272800--Sobic001G281400 Sobic004G272800--Sobic003G253000 Sobic001G048832 Sobic001G048832 Sobic004G272800--Sobic001G048832 Sobic002G190900 Sobic002G190900 Sobic004G272800--Sobic002G190900 Sobic002G345300 Sobic002G345300 Sobic004G272800--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic002G400000 Sobic002G400000 Sobic004G130900--Sobic002G400000 Sobic004G130900--Sobic004G327300 Sobic003G261400 Sobic003G261400 Sobic004G130900--Sobic003G261400 Sobic004G130900--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G130900--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic004G130900--Sobic007G096700 Sobic009G198500 Sobic009G198500 Sobic004G130900--Sobic009G198500 Sobic010G000900 Sobic010G000900 Sobic004G130900--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic004G130900--Sobic007G168600
Octagon: transcription factors


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