Gene annotation
Transcriptome id Sobic.007G195100.1
Synonym Sb07g026360, PBF1
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5YI35
Pfam PF00227
Panther DB PTHR11599 PTHR11599:SF55
NCBI CDD KOG0179; 20S proteasome, regulatory subunit beta type PSMB1/PRE7
KEGG Orthology K02732; 20S proteasome subunit beta 6
Gene Ontology GO:0005839; proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G60820 : N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
RAP-DB (Rice) LOC_Os08g41730.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a005247
Brachypodium KQJ99100
Barley HORVU5Hr1G076130.3 , HORVU5Hr1G076130.4 , HORVU5Hr1G076130.5 , HORVU5Hr1G076130.2 , HORVU5Hr1G076130.1
Wheat TraesCS5A02G285600 , TraesCS5D02G292900 , TraesCS5B02G284800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
3 Sobic.002G296300 expressed protein -
4 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
5 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
6 Sobic.009G111600 expressed protein -
7 Sobic.002G159300 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
8 Sobic.003G323600 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
9 Sobic.001G132100 expressed protein -
10 Sobic.002G155500 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
11 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
12 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.002G180600 expressed protein K17968: TRIAP1, TRIAP1/MDM35 family protein
14 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
15 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
16 Sobic.001G048832 - -
17 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
18 Sobic.002G153500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
19 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
20 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic007G195100 Sobic007G195100 Sobic003G333400 Sobic003G333400 Sobic007G195100--Sobic003G333400 Sobic003G367451 Sobic003G367451 Sobic007G195100--Sobic003G367451 Sobic002G296300 Sobic002G296300 Sobic007G195100--Sobic002G296300 Sobic004G050000 Sobic004G050000 Sobic007G195100--Sobic004G050000 Sobic001G403700 Sobic001G403700 Sobic007G195100--Sobic001G403700 Sobic009G111600 Sobic009G111600 Sobic007G195100--Sobic009G111600 Sobic002G159300 Sobic002G159300 Sobic007G195100--Sobic002G159300 Sobic003G323600 Sobic003G323600 Sobic007G195100--Sobic003G323600 Sobic001G132100 Sobic001G132100 Sobic007G195100--Sobic001G132100 Sobic003G333400--Sobic007G195100 Sobic009G146100 Sobic009G146100 Sobic003G333400--Sobic009G146100 Sobic002G180600 Sobic002G180600 Sobic003G333400--Sobic002G180600 Sobic008G179500 Sobic008G179500 Sobic003G333400--Sobic008G179500 Sobic004G276100 Sobic004G276100 Sobic003G333400--Sobic004G276100 Sobic004G277000 Sobic004G277000 Sobic003G333400--Sobic004G277000 Sobic002G249000 Sobic002G249000 Sobic003G333400--Sobic002G249000 Sobic003G333400--Sobic004G050000 Sobic003G253000 Sobic003G253000 Sobic003G333400--Sobic003G253000 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic001G433400 Sobic001G433400 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic005G176000 Sobic005G176000 Sobic002G296300--Sobic005G176000 Sobic008G097401 Sobic008G097401 Sobic002G296300--Sobic008G097401 Sobic010G204300 Sobic010G204300 Sobic002G296300--Sobic010G204300 Sobic007G186300 Sobic007G186300 Sobic002G296300--Sobic007G186300 Sobic002G296300--Sobic003G220600 Sobic003G115800 Sobic003G115800 Sobic002G296300--Sobic003G115800 Sobic003G332401 Sobic003G332401 Sobic002G296300--Sobic003G332401 Sobic002G296300--Sobic001G403700 Sobic003G007500 Sobic003G007500 Sobic002G296300--Sobic003G007500 Sobic009G043600 Sobic009G043600 Sobic004G050000--Sobic009G043600 Sobic001G066000 Sobic001G066000 Sobic004G050000--Sobic001G066000 Sobic004G049900 Sobic004G049900 Sobic004G050000--Sobic004G049900 Sobic004G050000--Sobic004G277000 Sobic002G267500 Sobic002G267500 Sobic004G050000--Sobic002G267500 Sobic006G121500 Sobic006G121500 Sobic004G050000--Sobic006G121500 Sobic002G090200 Sobic002G090200 Sobic004G050000--Sobic002G090200 Sobic009G177800 Sobic009G177800 Sobic004G050000--Sobic009G177800 Sobic006G108400 Sobic006G108400 Sobic004G050000--Sobic006G108400 Sobic001G403700--Sobic009G111600 Sobic004G284500 Sobic004G284500 Sobic001G403700--Sobic004G284500 Sobic002G078400 Sobic002G078400 Sobic001G403700--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic001G403700--Sobic006G182100 Sobic001G403700--Sobic002G296300 Sobic003G248600 Sobic003G248600 Sobic001G403700--Sobic003G248600 Sobic008G132800 Sobic008G132800 Sobic001G403700--Sobic008G132800 Sobic002G214900 Sobic002G214900 Sobic001G403700--Sobic002G214900 Sobic010G213400 Sobic010G213400 Sobic001G403700--Sobic010G213400 Sobic009G111600--Sobic004G284500 Sobic009G111600--Sobic001G403700 Sobic009G111600--Sobic004G276100 Sobic009G111600--Sobic008G179500 Sobic009G111600--Sobic002G083266 Sobic009G111600--Sobic003G367451 Sobic009G111600--Sobic010G213400 Sobic009G111600--Sobic004G272800 Sobic001G399100 Sobic001G399100 Sobic009G111600--Sobic001G399100 Sobic002G159300--Sobic007G195100 Sobic001G459500 Sobic001G459500 Sobic002G159300--Sobic001G459500 Sobic002G159300--Sobic003G323600 Sobic002G159300--Sobic003G367451 Sobic001G122500 Sobic001G122500 Sobic002G159300--Sobic001G122500 Sobic001G224400 Sobic001G224400 Sobic002G159300--Sobic001G224400 Sobic009G225000 Sobic009G225000 Sobic002G159300--Sobic009G225000 Sobic010G064600 Sobic010G064600 Sobic002G159300--Sobic010G064600 Sobic002G153500 Sobic002G153500 Sobic002G159300--Sobic002G153500 Sobic007G045600 Sobic007G045600 Sobic003G323600--Sobic007G045600 Sobic007G019100 Sobic007G019100 Sobic003G323600--Sobic007G019100 Sobic006G232200 Sobic006G232200 Sobic003G323600--Sobic006G232200 Sobic003G323600--Sobic001G459500 Sobic003G323600--Sobic003G367451 Sobic007G142500 Sobic007G142500 Sobic003G323600--Sobic007G142500 Sobic003G323600--Sobic001G132100 Sobic003G323600--Sobic001G236300 Sobic001G048832 Sobic001G048832 Sobic003G323600--Sobic001G048832 Sobic001G132100--Sobic001G048832 Sobic010G154700 Sobic010G154700 Sobic001G132100--Sobic010G154700 Sobic002G190900 Sobic002G190900 Sobic001G132100--Sobic002G190900 Sobic005G188100 Sobic005G188100 Sobic001G132100--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic001G132100--Sobic007G051000 Sobic002G398901 Sobic002G398901 Sobic001G132100--Sobic002G398901 Sobic009G119900 Sobic009G119900 Sobic001G132100--Sobic009G119900 Sobic010G018400 Sobic010G018400 Sobic001G132100--Sobic010G018400 Sobic001G132100--Sobic004G272800
Octagon: transcription factors


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