Gene annotation
Transcriptome id Sobic.001G158500.1
Synonym Sb01g013820, LSD1
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
LSD1 zinc finger domain containing protein, expressed
UniProt C5WR97
Pfam PF06943
Panther DB PTHR31747 PTHR31747:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20380 : LSD1 zinc finger family protein
RAP-DB (Rice) LOC_Os03g43840.1 : LSD1 zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007314
Brachypodium KQJ85856
Barley -
Wheat TraesCS5A02G376200 , TraesCS5B02G379800 , TraesCS5B02G379800 , TraesCS5D02G386200 , TraesCS5D02G386200 , TraesCS5D02G386200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
2 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
3 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
4 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
5 Sobic.002G083266 - K00326: cytochrome-b5 reductase
6 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase
8 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
9 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
10 Sobic.004G271700 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
11 Sobic.010G000900 spotted leaf 11, putative, expressed -
12 Sobic.006G091100 expressed protein -
13 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
14 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
15 Sobic.004G301400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K08331: autophagy-related protein 13
16 Sobic.003G061900 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
17 Sobic.004G167400 expressed protein -
18 Sobic.002G352700 expressed protein K08505: protein transport protein SFT1
19 Sobic.010G253800 expressed protein -
20 Sobic.007G125900 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic001G158500 Sobic001G158500 Sobic004G102400 Sobic004G102400 Sobic001G158500--Sobic004G102400 Sobic001G057800 Sobic001G057800 Sobic001G158500--Sobic001G057800 Sobic002G375300 Sobic002G375300 Sobic001G158500--Sobic002G375300 Sobic003G367451 Sobic003G367451 Sobic001G158500--Sobic003G367451 Sobic002G083266 Sobic002G083266 Sobic001G158500--Sobic002G083266 Sobic001G433400 Sobic001G433400 Sobic001G158500--Sobic001G433400 Sobic002G264400 Sobic002G264400 Sobic001G158500--Sobic002G264400 Sobic002G385900 Sobic002G385900 Sobic001G158500--Sobic002G385900 Sobic001G085900 Sobic001G085900 Sobic001G158500--Sobic001G085900 Sobic003G338400 Sobic003G338400 Sobic004G102400--Sobic003G338400 Sobic004G102400--Sobic001G158500 Sobic001G003000 Sobic001G003000 Sobic004G102400--Sobic001G003000 Sobic009G167700 Sobic009G167700 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic001G089800 Sobic001G089800 Sobic004G102400--Sobic001G089800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic001G323000 Sobic001G323000 Sobic001G057800--Sobic001G323000 Sobic002G400000 Sobic002G400000 Sobic001G057800--Sobic002G400000 Sobic002G352700 Sobic002G352700 Sobic001G057800--Sobic002G352700 Sobic001G057800--Sobic002G385900 Sobic001G057800--Sobic001G158500 Sobic004G130900 Sobic004G130900 Sobic001G057800--Sobic004G130900 Sobic010G000900 Sobic010G000900 Sobic001G057800--Sobic010G000900 Sobic010G168600 Sobic010G168600 Sobic001G057800--Sobic010G168600 Sobic009G207000 Sobic009G207000 Sobic001G057800--Sobic009G207000 Sobic002G375300--Sobic001G158500 Sobic001G395400 Sobic001G395400 Sobic002G375300--Sobic001G395400 Sobic002G375300--Sobic010G000900 Sobic003G416400 Sobic003G416400 Sobic002G375300--Sobic003G416400 Sobic007G068900 Sobic007G068900 Sobic002G375300--Sobic007G068900 Sobic003G098000 Sobic003G098000 Sobic002G375300--Sobic003G098000 Sobic006G092400 Sobic006G092400 Sobic002G375300--Sobic006G092400 Sobic002G352600 Sobic002G352600 Sobic002G375300--Sobic002G352600 Sobic002G375300--Sobic004G102400 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic003G367451--Sobic002G083266 Sobic003G367451--Sobic004G130900 Sobic003G253000 Sobic003G253000 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic002G083266--Sobic003G367451 Sobic006G264300 Sobic006G264300 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic009G111600 Sobic009G111600 Sobic002G083266--Sobic009G111600 Sobic001G224400 Sobic001G224400 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic002G083266--Sobic004G272800 Sobic002G045300 Sobic002G045300 Sobic001G433400--Sobic002G045300 Sobic001G433400--Sobic002G400000 Sobic001G433400--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic001G433400--Sobic009G146100 Sobic009G135600 Sobic009G135600 Sobic001G433400--Sobic009G135600 Sobic001G433400--Sobic003G253000 Sobic001G433400--Sobic003G220600 Sobic001G433400--Sobic004G327300 Sobic007G186300 Sobic007G186300 Sobic001G433400--Sobic007G186300 Sobic002G264400--Sobic006G264300 Sobic004G293700 Sobic004G293700 Sobic002G264400--Sobic004G293700 Sobic002G267500 Sobic002G267500 Sobic002G264400--Sobic002G267500 Sobic002G180600 Sobic002G180600 Sobic002G264400--Sobic002G180600 Sobic002G264400--Sobic003G253000 Sobic002G202300 Sobic002G202300 Sobic002G264400--Sobic002G202300 Sobic010G253800 Sobic010G253800 Sobic002G264400--Sobic010G253800 Sobic005G034400 Sobic005G034400 Sobic002G264400--Sobic005G034400 Sobic003G075500 Sobic003G075500 Sobic002G264400--Sobic003G075500 Sobic002G385900--Sobic009G135600 Sobic002G385900--Sobic001G057800 Sobic001G461900 Sobic001G461900 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G166900 Sobic002G166900 Sobic002G385900--Sobic002G166900 Sobic010G042100 Sobic010G042100 Sobic002G385900--Sobic010G042100 Sobic002G385900--Sobic001G323000 Sobic002G385900--Sobic009G207000 Sobic006G281800 Sobic006G281800 Sobic002G385900--Sobic006G281800 Sobic004G039300 Sobic004G039300 Sobic001G085900--Sobic004G039300 Sobic001G313500 Sobic001G313500 Sobic001G085900--Sobic001G313500 Sobic001G085900--Sobic001G158500 Sobic001G085900--Sobic002G083266 Sobic001G085900--Sobic002G385900 Sobic010G129600 Sobic010G129600 Sobic001G085900--Sobic010G129600 Sobic001G298300 Sobic001G298300 Sobic001G085900--Sobic001G298300 Sobic007G006700 Sobic007G006700 Sobic001G085900--Sobic007G006700 Sobic003G061900 Sobic003G061900 Sobic001G085900--Sobic003G061900
Octagon: transcription factors


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