Gene annotation
Transcriptome id Sobic.004G271700.1
Synonym ATARFB1B, ARFB1B, Sb04g030910
Functional annotation ADP-ribosylation factor, putative, expressed
UniProt C5Y0F1
Pfam PF08477
Panther DB PTHR11711 PTHR11711:SF168
NCBI CDD KOG0070; GTP-binding ADP-ribosylation factor Arf1
KEGG Orthology K07977; Arf/Sar family, other
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT5G17060 : ADP-ribosylation factor B1B
RAP-DB (Rice) LOC_Os02g47110.1 : ADP-ribosylation factor, putative, expressed
MaizeGDB (Corn) Zm00025a021658 , Zm00025a018831 , Zm00025a041553 , Zm00025a032411
Brachypodium PNT67159
Barley HORVU1Hr1G051350.5 , HORVU1Hr1G051350.4 , HORVU1Hr1G051350.7 , HORVU1Hr1G051350.6 , HORVU1Hr1G051350.1 , HORVU1Hr1G051350.3 , HORVU1Hr1G051350.2 , HORVU1Hr1G051350.8 , HORVU6Hr1G067840.3 , HORVU6Hr1G067840.2 , HORVU6Hr1G067840.1 , HORVU6Hr1G067840.5 , HORVU6Hr1G067840.4
Wheat TraesCS6B02G295200 , TraesCS1D02G201300 , TraesCS1A02G197800 , TraesCS6D02G246900 , TraesCS6A02G268000 , TraesCS1B02G212500
Populus -


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cDNA sequences
Sobic.004G271700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G115500 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
2 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
3 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
4 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
5 Sobic.001G158500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LSD1 zinc finger domain containing protein, expressed -
6 Sobic.001G103200 DNA binding protein, putative, expressed -
7 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
8 Sobic.001G220400 SNF7 domain containing protein, putative, expressed K12192: charged multivesicular body protein 2B
9 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -
10 Sobic.003G367300 actin, putative, expressed K10355: actin, other eukaryote
11 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
12 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
13 Sobic.001G329100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
14 Sobic.001G328200 interferon-related developmental regulator, putative, expressed -
15 Sobic.010G052800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
16 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
17 Sobic.001G358300 SNARE associated Golgi protein, putative, expressed -
18 Sobic.006G264300 GA18008-PA, putative, expressed -
19 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
20 Sobic.006G163000 src homology-3 domain protein 3, putative, expressed -


Gene co-expression network
sample Sobic004G271700 Sobic004G271700 Sobic008G115500 Sobic008G115500 Sobic004G271700--Sobic008G115500 Sobic001G516100 Sobic001G516100 Sobic004G271700--Sobic001G516100 Sobic003G002400 Sobic003G002400 Sobic004G271700--Sobic003G002400 Sobic009G219900 Sobic009G219900 Sobic004G271700--Sobic009G219900 Sobic001G158500 Sobic001G158500 Sobic004G271700--Sobic001G158500 Sobic001G103200 Sobic001G103200 Sobic004G271700--Sobic001G103200 Sobic010G188100 Sobic010G188100 Sobic004G271700--Sobic010G188100 Sobic001G220400 Sobic001G220400 Sobic004G271700--Sobic001G220400 Sobic002G293300 Sobic002G293300 Sobic004G271700--Sobic002G293300 Sobic001G074200 Sobic001G074200 Sobic008G115500--Sobic001G074200 Sobic008G115500--Sobic004G271700 Sobic009G127000 Sobic009G127000 Sobic008G115500--Sobic009G127000 Sobic008G115500--Sobic003G002400 Sobic008G115500--Sobic001G516100 Sobic003G367300 Sobic003G367300 Sobic008G115500--Sobic003G367300 Sobic001G085900 Sobic001G085900 Sobic008G115500--Sobic001G085900 Sobic008G115500--Sobic001G103200 Sobic001G180900 Sobic001G180900 Sobic008G115500--Sobic001G180900 Sobic004G031600 Sobic004G031600 Sobic001G516100--Sobic004G031600 Sobic001G516100--Sobic001G103200 Sobic001G516100--Sobic003G367300 Sobic001G516100--Sobic004G271700 Sobic002G330300 Sobic002G330300 Sobic001G516100--Sobic002G330300 Sobic001G516100--Sobic002G293300 Sobic001G541100 Sobic001G541100 Sobic001G516100--Sobic001G541100 Sobic001G516100--Sobic003G002400 Sobic004G274400 Sobic004G274400 Sobic001G516100--Sobic004G274400 Sobic004G350300 Sobic004G350300 Sobic003G002400--Sobic004G350300 Sobic003G002400--Sobic004G274400 Sobic001G434900 Sobic001G434900 Sobic003G002400--Sobic001G434900 Sobic002G045300 Sobic002G045300 Sobic003G002400--Sobic002G045300 Sobic003G220600 Sobic003G220600 Sobic003G002400--Sobic003G220600 Sobic003G002400--Sobic004G271700 Sobic001G122500 Sobic001G122500 Sobic003G002400--Sobic001G122500 Sobic006G033200 Sobic006G033200 Sobic003G002400--Sobic006G033200 Sobic010G101500 Sobic010G101500 Sobic003G002400--Sobic010G101500 Sobic009G219900--Sobic010G188100 Sobic009G219900--Sobic001G220400 Sobic003G077900 Sobic003G077900 Sobic009G219900--Sobic003G077900 Sobic009G219900--Sobic001G541100 Sobic001G328200 Sobic001G328200 Sobic009G219900--Sobic001G328200 Sobic006G225600 Sobic006G225600 Sobic009G219900--Sobic006G225600 Sobic009G219900--Sobic010G101500 Sobic001G414500 Sobic001G414500 Sobic009G219900--Sobic001G414500 Sobic002G431600 Sobic002G431600 Sobic009G219900--Sobic002G431600 Sobic004G102400 Sobic004G102400 Sobic001G158500--Sobic004G102400 Sobic001G057800 Sobic001G057800 Sobic001G158500--Sobic001G057800 Sobic002G375300 Sobic002G375300 Sobic001G158500--Sobic002G375300 Sobic003G367451 Sobic003G367451 Sobic001G158500--Sobic003G367451 Sobic002G083266 Sobic002G083266 Sobic001G158500--Sobic002G083266 Sobic001G433400 Sobic001G433400 Sobic001G158500--Sobic001G433400 Sobic002G264400 Sobic002G264400 Sobic001G158500--Sobic002G264400 Sobic002G385900 Sobic002G385900 Sobic001G158500--Sobic002G385900 Sobic001G158500--Sobic001G085900 Sobic001G103200--Sobic001G516100 Sobic001G358300 Sobic001G358300 Sobic001G103200--Sobic001G358300 Sobic001G103200--Sobic004G271700 Sobic001G510700 Sobic001G510700 Sobic001G103200--Sobic001G510700 Sobic009G135100 Sobic009G135100 Sobic001G103200--Sobic009G135100 Sobic001G103200--Sobic009G219900 Sobic001G103200--Sobic004G350300 Sobic001G350900 Sobic001G350900 Sobic001G103200--Sobic001G350900 Sobic001G103200--Sobic003G002400 Sobic010G188100--Sobic001G220400 Sobic010G188100--Sobic009G219900 Sobic010G188100--Sobic010G101500 Sobic010G188100--Sobic003G367451 Sobic010G188100--Sobic003G077900 Sobic009G001400 Sobic009G001400 Sobic010G188100--Sobic009G001400 Sobic002G400000 Sobic002G400000 Sobic010G188100--Sobic002G400000 Sobic002G166900 Sobic002G166900 Sobic010G188100--Sobic002G166900 Sobic001G283500 Sobic001G283500 Sobic010G188100--Sobic001G283500 Sobic001G220400--Sobic010G188100 Sobic001G220400--Sobic009G219900 Sobic001G220400--Sobic010G101500 Sobic001G220400--Sobic003G077900 Sobic001G220400--Sobic003G367451 Sobic001G220400--Sobic003G220600 Sobic001G220400--Sobic009G001400 Sobic006G163000 Sobic006G163000 Sobic001G220400--Sobic006G163000 Sobic002G122700 Sobic002G122700 Sobic001G220400--Sobic002G122700 Sobic002G293300--Sobic003G367300 Sobic001G436000 Sobic001G436000 Sobic002G293300--Sobic001G436000 Sobic002G379400 Sobic002G379400 Sobic002G293300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G293300--Sobic010G052800 Sobic009G231200 Sobic009G231200 Sobic002G293300--Sobic009G231200 Sobic002G293300--Sobic002G330300 Sobic001G082900 Sobic001G082900 Sobic002G293300--Sobic001G082900 Sobic004G025000 Sobic004G025000 Sobic002G293300--Sobic004G025000 Sobic002G293300--Sobic001G516100
Octagon: transcription factors


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