Gene annotation
Transcriptome id Sobic.006G163000.3,Sobic.006G163000.4
Synonym Sb06g023950
Functional annotation src homology-3 domain protein 3, putative, expressed
UniProt A0A1Z5RF72 , A0A1Z5REA2
Pfam PF00018
Panther DB PTHR10663 PTHR10663:SF163
NCBI CDD KOG1118; Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G34660 : SH3 domain-containing protein
RAP-DB (Rice) LOC_Os04g45670.1 : src homology-3 domain protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a010393 , Zm00025a056615
Brachypodium KQJ83829 , KQJ83830 , KQJ83831
Barley HORVU2Hr1G092430.8 , HORVU2Hr1G092430.2 , HORVU2Hr1G092430.3 , HORVU2Hr1G092430.1 , HORVU2Hr1G092430.6 , HORVU2Hr1G092430.7 , HORVU2Hr1G092430.4 , HORVU2Hr1G092430.5
Wheat TraesCS2B02G406500 , TraesCS2A02G388400 , TraesCS2A02G388400 , TraesCS2B02G406500 , TraesCS2B02G406500 , TraesCS2D02G386200 , TraesCS2D02G386200 , TraesCS2D02G386200
Populus PNT21003 , PNT21002


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G220400 SNF7 domain containing protein, putative, expressed K12192: charged multivesicular body protein 2B
2 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
3 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
4 Sobic.002G122700 expressed protein -
5 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
6 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
7 Sobic.004G271700 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
8 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
9 Sobic.002G413000 AAA-type ATPase family protein, putative, expressed -
10 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
11 Sobic.001G329100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
12 Sobic.010G052800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
13 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
14 Sobic.001G162100 WRKY94, expressed -
15 Sobic.003G295900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
16 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
17 Sobic.001G031600 calmodulin binding protein, putative, expressed -
18 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
19 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase
20 Sobic.004G350300 No apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic006G163000 Sobic006G163000 Sobic001G220400 Sobic001G220400 Sobic006G163000--Sobic001G220400 Sobic002G045300 Sobic002G045300 Sobic006G163000--Sobic002G045300 Sobic004G234900 Sobic004G234900 Sobic006G163000--Sobic004G234900 Sobic002G122700 Sobic002G122700 Sobic006G163000--Sobic002G122700 Sobic003G220600 Sobic003G220600 Sobic006G163000--Sobic003G220600 Sobic010G101500 Sobic010G101500 Sobic006G163000--Sobic010G101500 Sobic004G271700 Sobic004G271700 Sobic006G163000--Sobic004G271700 Sobic009G219900 Sobic009G219900 Sobic006G163000--Sobic009G219900 Sobic002G413000 Sobic002G413000 Sobic006G163000--Sobic002G413000 Sobic010G188100 Sobic010G188100 Sobic001G220400--Sobic010G188100 Sobic001G220400--Sobic009G219900 Sobic001G220400--Sobic010G101500 Sobic003G077900 Sobic003G077900 Sobic001G220400--Sobic003G077900 Sobic003G367451 Sobic003G367451 Sobic001G220400--Sobic003G367451 Sobic001G220400--Sobic003G220600 Sobic009G001400 Sobic009G001400 Sobic001G220400--Sobic009G001400 Sobic001G220400--Sobic006G163000 Sobic001G220400--Sobic002G122700 Sobic001G433400 Sobic001G433400 Sobic002G045300--Sobic001G433400 Sobic010G042100 Sobic010G042100 Sobic002G045300--Sobic010G042100 Sobic003G253000 Sobic003G253000 Sobic002G045300--Sobic003G253000 Sobic002G045300--Sobic003G220600 Sobic004G049900 Sobic004G049900 Sobic002G045300--Sobic004G049900 Sobic002G045300--Sobic003G367451 Sobic003G130800 Sobic003G130800 Sobic002G045300--Sobic003G130800 Sobic009G135600 Sobic009G135600 Sobic002G045300--Sobic009G135600 Sobic002G045300--Sobic010G101500 Sobic001G098200 Sobic001G098200 Sobic004G234900--Sobic001G098200 Sobic006G225600 Sobic006G225600 Sobic004G234900--Sobic006G225600 Sobic004G234900--Sobic002G122700 Sobic001G162100 Sobic001G162100 Sobic004G234900--Sobic001G162100 Sobic002G251700 Sobic002G251700 Sobic004G234900--Sobic002G251700 Sobic010G174500 Sobic010G174500 Sobic004G234900--Sobic010G174500 Sobic006G254800 Sobic006G254800 Sobic004G234900--Sobic006G254800 Sobic001G180900 Sobic001G180900 Sobic004G234900--Sobic001G180900 Sobic010G000900 Sobic010G000900 Sobic004G234900--Sobic010G000900 Sobic002G122700--Sobic004G234900 Sobic002G122700--Sobic006G225600 Sobic001G434900 Sobic001G434900 Sobic002G122700--Sobic001G434900 Sobic002G122700--Sobic010G101500 Sobic002G122700--Sobic001G220400 Sobic001G329100 Sobic001G329100 Sobic002G122700--Sobic001G329100 Sobic002G122700--Sobic010G000900 Sobic002G122700--Sobic010G188100 Sobic003G248600 Sobic003G248600 Sobic002G122700--Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G220600--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic003G220600--Sobic009G146100 Sobic010G101500--Sobic010G188100 Sobic010G101500--Sobic003G220600 Sobic010G101500--Sobic001G220400 Sobic010G101500--Sobic002G045300 Sobic010G101500--Sobic003G077900 Sobic001G440700 Sobic001G440700 Sobic010G101500--Sobic001G440700 Sobic010G101500--Sobic002G122700 Sobic002G400000 Sobic002G400000 Sobic010G101500--Sobic002G400000 Sobic010G101500--Sobic009G219900 Sobic008G115500 Sobic008G115500 Sobic004G271700--Sobic008G115500 Sobic001G516100 Sobic001G516100 Sobic004G271700--Sobic001G516100 Sobic003G002400 Sobic003G002400 Sobic004G271700--Sobic003G002400 Sobic004G271700--Sobic009G219900 Sobic001G158500 Sobic001G158500 Sobic004G271700--Sobic001G158500 Sobic001G103200 Sobic001G103200 Sobic004G271700--Sobic001G103200 Sobic004G271700--Sobic010G188100 Sobic004G271700--Sobic001G220400 Sobic002G293300 Sobic002G293300 Sobic004G271700--Sobic002G293300 Sobic009G219900--Sobic010G188100 Sobic009G219900--Sobic001G220400 Sobic009G219900--Sobic003G077900 Sobic001G541100 Sobic001G541100 Sobic009G219900--Sobic001G541100 Sobic001G328200 Sobic001G328200 Sobic009G219900--Sobic001G328200 Sobic009G219900--Sobic006G225600 Sobic009G219900--Sobic010G101500 Sobic001G414500 Sobic001G414500 Sobic009G219900--Sobic001G414500 Sobic002G431600 Sobic002G431600 Sobic009G219900--Sobic002G431600 Sobic010G052800 Sobic010G052800 Sobic002G413000--Sobic010G052800 Sobic009G193400 Sobic009G193400 Sobic002G413000--Sobic009G193400 Sobic002G413000--Sobic004G293700 Sobic002G413000--Sobic003G220600 Sobic001G031600 Sobic001G031600 Sobic002G413000--Sobic001G031600 Sobic002G413000--Sobic007G059900 Sobic004G079100 Sobic004G079100 Sobic002G413000--Sobic004G079100 Sobic002G413000--Sobic003G002400 Sobic002G413000--Sobic001G329100
Octagon: transcription factors


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