Gene annotation
Transcriptome id Sobic.002G413000.2
Synonym Sb02g042560
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1W0W7U1
Pfam PF05496
Panther DB PTHR23074 PTHR23074:SF89
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT1G02890 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os07g47530.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a052394 , Zm00025a001232 , Zm00025a002409 , Zm00025a015408 , Zm00025a043267
Brachypodium KQK21732 , KQK14701 , KQK14700
Barley HORVU2Hr1G019730.12 , HORVU2Hr1G019730.13 , HORVU2Hr1G019730.10 , HORVU2Hr1G019730.14 , HORVU2Hr1G019730.15 , HORVU2Hr1G019730.8 , HORVU2Hr1G019730.9 , HORVU2Hr1G019730.1 , HORVU2Hr1G019730.2 , HORVU2Hr1G019730.3 , HORVU2Hr1G019730.4 , HORVU2Hr1G019730.5 , HORVU2Hr1G019730.7 , HORVU4Hr1G046420.18 , HORVU4Hr1G046420.19 , HORVU4Hr1G046420.14 , HORVU4Hr1G046420.15 , HORVU4Hr1G046420.17 , HORVU4Hr1G046420.10 , HORVU4Hr1G046420.11 , HORVU4Hr1G046420.12 , HORVU4Hr1G046420.13 , HORVU2Hr1G019730.18 , HORVU4Hr1G046420.21 , HORVU4Hr1G046420.20 , HORVU4Hr1G046420.22 , HORVU4Hr1G046420.6 , HORVU4Hr1G046420.7 , HORVU4Hr1G046420.4 , HORVU4Hr1G046420.5 , HORVU4Hr1G046420.2 , HORVU4Hr1G046420.3 , HORVU4Hr1G046420.8 , HORVU4Hr1G046420.9
Wheat TraesCS2D02G114500 , TraesCS2D02G114500 , TraesCS2D02G114500 , TraesCS4B02G155600 , TraesCS4B02G155600 , TraesCS4B02G155600 , TraesCS4B02G155600 , TraesCS2D02G114500 , TraesCS2D02G114500 , TraesCS4D02G168600 , TraesCS4D02G168600 , TraesCS4D02G168600 , TraesCS4D02G168600 , TraesCS2A02G113900 , TraesCS2A02G113900 , TraesCS2A02G113900 , TraesCS2A02G113900 , TraesCS2A02G113900 , TraesCS4D02G168600 , TraesCS4D02G168600 , TraesCS2B02G132900 , TraesCS2B02G132900 , TraesCS2B02G132900 , TraesCS2B02G132900 , TraesCS2B02G132900 , TraesCS4A02G142800 , TraesCS4A02G142800 , TraesCS4A02G142800 , TraesCS4A02G142800 , TraesCS4A02G142800 , TraesCS4A02G142800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G052800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
2 Sobic.009G193400 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
3 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
4 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
5 Sobic.001G031600 calmodulin binding protein, putative, expressed -
6 Sobic.007G059900 DUF292 domain containing protein, expressed -
7 Sobic.004G079100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
8 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
9 Sobic.001G329100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
10 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
11 Sobic.006G264300 GA18008-PA, putative, expressed -
12 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase
13 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
14 Sobic.009G171700 SAG20, putative, expressed -
15 Sobic.002G194100 annexin, putative, expressed K17095: annexin A7/11
16 Sobic.008G180900 YIF1B, putative, expressed -
17 Sobic.010G253800 expressed protein -
18 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
19 Sobic.004G350300 No apical meristem protein, putative, expressed -
20 Sobic.001G477650 - -


Gene co-expression network
sample Sobic002G413000 Sobic002G413000 Sobic010G052800 Sobic010G052800 Sobic002G413000--Sobic010G052800 Sobic009G193400 Sobic009G193400 Sobic002G413000--Sobic009G193400 Sobic004G293700 Sobic004G293700 Sobic002G413000--Sobic004G293700 Sobic003G220600 Sobic003G220600 Sobic002G413000--Sobic003G220600 Sobic001G031600 Sobic001G031600 Sobic002G413000--Sobic001G031600 Sobic007G059900 Sobic007G059900 Sobic002G413000--Sobic007G059900 Sobic004G079100 Sobic004G079100 Sobic002G413000--Sobic004G079100 Sobic003G002400 Sobic003G002400 Sobic002G413000--Sobic003G002400 Sobic001G329100 Sobic001G329100 Sobic002G413000--Sobic001G329100 Sobic002G330300 Sobic002G330300 Sobic010G052800--Sobic002G330300 Sobic010G052800--Sobic002G413000 Sobic002G293300 Sobic002G293300 Sobic010G052800--Sobic002G293300 Sobic001G482100 Sobic001G482100 Sobic010G052800--Sobic001G482100 Sobic004G031600 Sobic004G031600 Sobic010G052800--Sobic004G031600 Sobic006G263100 Sobic006G263100 Sobic010G052800--Sobic006G263100 Sobic002G379400 Sobic002G379400 Sobic010G052800--Sobic002G379400 Sobic004G280800 Sobic004G280800 Sobic010G052800--Sobic004G280800 Sobic010G052800--Sobic007G059900 Sobic003G007500 Sobic003G007500 Sobic009G193400--Sobic003G007500 Sobic003G433100 Sobic003G433100 Sobic009G193400--Sobic003G433100 Sobic009G171700 Sobic009G171700 Sobic009G193400--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G193400--Sobic008G180900 Sobic003G295400 Sobic003G295400 Sobic009G193400--Sobic003G295400 Sobic004G104900 Sobic004G104900 Sobic009G193400--Sobic004G104900 Sobic001G478300 Sobic001G478300 Sobic009G193400--Sobic001G478300 Sobic009G193400--Sobic002G413000 Sobic010G083700 Sobic010G083700 Sobic009G193400--Sobic010G083700 Sobic010G253800 Sobic010G253800 Sobic004G293700--Sobic010G253800 Sobic004G293700--Sobic004G079100 Sobic004G293700--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic004G293700--Sobic001G054200 Sobic004G248800 Sobic004G248800 Sobic004G293700--Sobic004G248800 Sobic004G293700--Sobic009G171700 Sobic002G264400 Sobic002G264400 Sobic004G293700--Sobic002G264400 Sobic006G141500 Sobic006G141500 Sobic004G293700--Sobic006G141500 Sobic004G293700--Sobic003G220600 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G253000 Sobic003G253000 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic003G220600--Sobic007G059900 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic003G220600--Sobic009G146100 Sobic001G105500 Sobic001G105500 Sobic001G031600--Sobic001G105500 Sobic001G031600--Sobic002G413000 Sobic006G209400 Sobic006G209400 Sobic001G031600--Sobic006G209400 Sobic001G031600--Sobic009G193400 Sobic001G031600--Sobic003G002400 Sobic003G309200 Sobic003G309200 Sobic001G031600--Sobic003G309200 Sobic007G019800 Sobic007G019800 Sobic001G031600--Sobic007G019800 Sobic001G031600--Sobic004G031600 Sobic001G541100 Sobic001G541100 Sobic001G031600--Sobic001G541100 Sobic007G059900--Sobic003G220600 Sobic006G062800 Sobic006G062800 Sobic007G059900--Sobic006G062800 Sobic010G204300 Sobic010G204300 Sobic007G059900--Sobic010G204300 Sobic007G186300 Sobic007G186300 Sobic007G059900--Sobic007G186300 Sobic002G261900 Sobic002G261900 Sobic007G059900--Sobic002G261900 Sobic008G161000 Sobic008G161000 Sobic007G059900--Sobic008G161000 Sobic007G059900--Sobic004G293700 Sobic002G296300 Sobic002G296300 Sobic007G059900--Sobic002G296300 Sobic009G152200 Sobic009G152200 Sobic007G059900--Sobic009G152200 Sobic004G079100--Sobic004G293700 Sobic001G138300 Sobic001G138300 Sobic004G079100--Sobic001G138300 Sobic004G079100--Sobic001G054200 Sobic004G079100--Sobic010G083700 Sobic004G079100--Sobic003G115800 Sobic004G079100--Sobic007G186300 Sobic009G246950 Sobic009G246950 Sobic004G079100--Sobic009G246950 Sobic004G079100--Sobic009G171700 Sobic001G371300 Sobic001G371300 Sobic004G079100--Sobic001G371300 Sobic004G350300 Sobic004G350300 Sobic003G002400--Sobic004G350300 Sobic004G274400 Sobic004G274400 Sobic003G002400--Sobic004G274400 Sobic001G434900 Sobic001G434900 Sobic003G002400--Sobic001G434900 Sobic002G045300 Sobic002G045300 Sobic003G002400--Sobic002G045300 Sobic003G002400--Sobic003G220600 Sobic004G271700 Sobic004G271700 Sobic003G002400--Sobic004G271700 Sobic001G122500 Sobic001G122500 Sobic003G002400--Sobic001G122500 Sobic006G033200 Sobic006G033200 Sobic003G002400--Sobic006G033200 Sobic010G101500 Sobic010G101500 Sobic003G002400--Sobic010G101500 Sobic006G264300 Sobic006G264300 Sobic001G329100--Sobic006G264300 Sobic005G195200 Sobic005G195200 Sobic001G329100--Sobic005G195200 Sobic001G329100--Sobic002G264400 Sobic004G167400 Sobic004G167400 Sobic001G329100--Sobic004G167400 Sobic002G180600 Sobic002G180600 Sobic001G329100--Sobic002G180600 Sobic003G117900 Sobic003G117900 Sobic001G329100--Sobic003G117900 Sobic001G329100--Sobic010G253800 Sobic002G122700 Sobic002G122700 Sobic001G329100--Sobic002G122700 Sobic006G254800 Sobic006G254800 Sobic001G329100--Sobic006G254800
Octagon: transcription factors


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