Gene annotation
Transcriptome id Sobic.002G202300.3,Sobic.002G202300.2,Sobic.002G202300.1
Synonym Sb02g024720, atgos11, GOS11
Functional annotation vesicle transport v-SNARE protein, putative, expressed
UniProt A0A1W0W503 , C5XCU1
Pfam PF12352
Panther DB PTHR21094:SF1 PTHR21094 PTHR21094 PTHR21094:SF1
NCBI CDD KOG3208; SNARE protein GS28
KEGG Orthology K08495; GOSR1, golgi SNAP receptor complex member 1
Gene Ontology GO:0016021; integral component of membrane GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0005801cis-Golgi network GO:0000139Golgi membrane GO:0000139Golgi membrane GO:0005801cis-Golgi network GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G15880 : golgi snare 11
RAP-DB (Rice) LOC_Os09g24980.1 : vesicle transport v-SNARE protein, putative, expressed
MaizeGDB (Corn) Zm00025a013908 , Zm00025a046989
Brachypodium KQJ90245 , KQJ90220
Barley HORVU5Hr1G065500.3 , HORVU5Hr1G065500.2 , HORVU5Hr1G065500.1
Wheat TraesCS5B02G224500 , TraesCS5A02G226000
Populus -


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cDNA sequences
Sobic.002G202300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
2 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
3 Sobic.006G141500 expressed protein -
4 Sobic.006G264300 GA18008-PA, putative, expressed -
5 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
6 Sobic.003G115800 miro, putative, expressed K07953: GTP-binding protein SAR1
7 Sobic.010G204300 expressed protein -
8 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
9 Sobic.006G182100 ORM1, putative, expressed -
10 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
11 Sobic.002G194100 annexin, putative, expressed K17095: annexin A7/11
12 Sobic.004G196300 ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
13 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
14 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
15 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase
16 Sobic.007G045600 MSP domain containing protein, expressed -
17 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
18 Sobic.009G149400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K15849: PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
19 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
20 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19


Gene co-expression network
sample Sobic002G202300 Sobic002G202300 Sobic003G253000 Sobic003G253000 Sobic002G202300--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic002G202300--Sobic003G220600 Sobic006G141500 Sobic006G141500 Sobic002G202300--Sobic006G141500 Sobic006G264300 Sobic006G264300 Sobic002G202300--Sobic006G264300 Sobic002G046100 Sobic002G046100 Sobic002G202300--Sobic002G046100 Sobic003G115800 Sobic003G115800 Sobic002G202300--Sobic003G115800 Sobic010G204300 Sobic010G204300 Sobic002G202300--Sobic010G204300 Sobic006G062800 Sobic006G062800 Sobic002G202300--Sobic006G062800 Sobic006G182100 Sobic006G182100 Sobic002G202300--Sobic006G182100 Sobic003G253000--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic003G220600--Sobic002G202300 Sobic003G220600--Sobic003G253000 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic003G220600--Sobic009G146100 Sobic006G141500--Sobic003G253000 Sobic010G243200 Sobic010G243200 Sobic006G141500--Sobic010G243200 Sobic002G282400 Sobic002G282400 Sobic006G141500--Sobic002G282400 Sobic002G218000 Sobic002G218000 Sobic006G141500--Sobic002G218000 Sobic006G141500--Sobic004G300900 Sobic003G350300 Sobic003G350300 Sobic006G141500--Sobic003G350300 Sobic008G161800 Sobic008G161800 Sobic006G141500--Sobic008G161800 Sobic004G248800 Sobic004G248800 Sobic006G141500--Sobic004G248800 Sobic006G141500--Sobic002G046100 Sobic002G264400 Sobic002G264400 Sobic006G264300--Sobic002G264400 Sobic002G083266 Sobic002G083266 Sobic006G264300--Sobic002G083266 Sobic006G264300--Sobic002G202300 Sobic002G180600 Sobic002G180600 Sobic006G264300--Sobic002G180600 Sobic006G264300--Sobic002G267500 Sobic001G329100 Sobic001G329100 Sobic006G264300--Sobic001G329100 Sobic009G149400 Sobic009G149400 Sobic006G264300--Sobic009G149400 Sobic005G034400 Sobic005G034400 Sobic006G264300--Sobic005G034400 Sobic006G264300--Sobic003G253000 Sobic003G285800 Sobic003G285800 Sobic002G046100--Sobic003G285800 Sobic001G281400 Sobic001G281400 Sobic002G046100--Sobic001G281400 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic010G086200 Sobic010G086200 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic001G477300 Sobic001G477300 Sobic002G046100--Sobic001G477300 Sobic002G046100--Sobic002G267500 Sobic002G190900 Sobic002G190900 Sobic002G046100--Sobic002G190900 Sobic007G186300 Sobic007G186300 Sobic003G115800--Sobic007G186300 Sobic003G115800--Sobic004G300900 Sobic003G115800--Sobic003G220600 Sobic002G078400 Sobic002G078400 Sobic003G115800--Sobic002G078400 Sobic003G115800--Sobic010G204300 Sobic001G054200 Sobic001G054200 Sobic003G115800--Sobic001G054200 Sobic003G115800--Sobic002G202300 Sobic004G079100 Sobic004G079100 Sobic003G115800--Sobic004G079100 Sobic003G115800--Sobic004G293700 Sobic008G161000 Sobic008G161000 Sobic010G204300--Sobic008G161000 Sobic010G204300--Sobic003G115800 Sobic010G204300--Sobic007G059900 Sobic001G147200 Sobic001G147200 Sobic010G204300--Sobic001G147200 Sobic002G296300 Sobic002G296300 Sobic010G204300--Sobic002G296300 Sobic010G204300--Sobic002G202300 Sobic003G181500 Sobic003G181500 Sobic010G204300--Sobic003G181500 Sobic010G204300--Sobic006G062800 Sobic010G246000 Sobic010G246000 Sobic010G204300--Sobic010G246000 Sobic010G213400 Sobic010G213400 Sobic006G062800--Sobic010G213400 Sobic003G249800 Sobic003G249800 Sobic006G062800--Sobic003G249800 Sobic006G062800--Sobic003G285800 Sobic006G062800--Sobic007G059900 Sobic009G129000 Sobic009G129000 Sobic006G062800--Sobic009G129000 Sobic006G062800--Sobic002G218000 Sobic006G062800--Sobic002G202300 Sobic009G033700 Sobic009G033700 Sobic006G062800--Sobic009G033700 Sobic002G261900 Sobic002G261900 Sobic006G062800--Sobic002G261900 Sobic004G284500 Sobic004G284500 Sobic006G182100--Sobic004G284500 Sobic006G182100--Sobic009G033700 Sobic006G182100--Sobic002G046100 Sobic010G018400 Sobic010G018400 Sobic006G182100--Sobic010G018400 Sobic004G196300 Sobic004G196300 Sobic006G182100--Sobic004G196300 Sobic006G182100--Sobic001G281400 Sobic008G185400 Sobic008G185400 Sobic006G182100--Sobic008G185400 Sobic003G368500 Sobic003G368500 Sobic006G182100--Sobic003G368500 Sobic001G445800 Sobic001G445800 Sobic006G182100--Sobic001G445800
Octagon: transcription factors


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