Gene annotation
Transcriptome id Sobic.001G040800.1
Synonym Sb01g003770, ARFA1F, ATARFA1F
Functional annotation ADP-ribosylation factor, putative, expressed
UniProt C5WVZ4
Pfam PF09439
Panther DB PTHR11711 PTHR11711:SF181
NCBI CDD KOG0070; GTP-binding ADP-ribosylation factor Arf1
KEGG Orthology K07937; ADP-ribosylation factor 1/2 K07977Arf/Sar family, other
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G10630 : ADP-ribosylation factor A1F
RAP-DB (Rice) LOC_Os03g59740.3 : ADP-ribosylation factor, putative, expressed
MaizeGDB (Corn) Zm00025a044059 , Zm00025a016469 , Zm00025a035278 , Zm00025a027123 , Zm00025a013401 , Zm00025a045417 , Zm00025a039804
Brachypodium PNT73921 , PNT73073 , KQK12518 , KQJ92478 , KQK20331 , KQK20330 , KQK20333 , KQK20332 , KQK20335 , KQK10268 , KQK10269
Barley HORVU2Hr1G054760.1 , HORVU2Hr1G054760.2 , HORVU2Hr1G054760.3 , HORVU2Hr1G054760.4 , HORVU1Hr1G068790.3 , HORVU1Hr1G068790.5 , HORVU1Hr1G068790.4 , HORVU1Hr1G068790.7 , HORVU1Hr1G068790.6 , HORVU5Hr1G111500.3 , HORVU5Hr1G111500.2 , HORVU5Hr1G111500.1 , HORVU5Hr1G111500.5 , HORVU5Hr1G111500.4 , HORVU3Hr1G079700.2 , HORVU3Hr1G079700.1 , HORVU3Hr1G079700.6 , HORVU3Hr1G079700.7 , HORVU3Hr1G079700.4 , HORVU3Hr1G079700.5 , HORVU3Hr1G079700.8 , HORVU5Hr1G045440.4 , HORVU5Hr1G045440.5 , HORVU5Hr1G045440.6 , HORVU5Hr1G045440.1 , HORVU5Hr1G045440.2 , HORVU5Hr1G045440.3 , HORVU0Hr1G027130.5 , HORVU0Hr1G027130.4 , HORVU0Hr1G027130.6 , HORVU0Hr1G027130.1 , HORVU0Hr1G027130.3 , HORVU0Hr1G027130.2 , HORVU1Hr1G068790.2 , HORVU2Hr1G054780.4 , HORVU2Hr1G054780.5 , HORVU2Hr1G054780.2 , HORVU2Hr1G054780.3 , HORVU2Hr1G054780.1 , HORVU1Hr1G068790.1
Wheat TraesCS2D02G244900 , TraesCS2D02G244900 , TraesCS3A02G337300 , TraesCS3A02G337300 , TraesCS1B02G317000 , TraesCS3D02G330500 , TraesCS3D02G330500 , TraesCS5A02G467400 , TraesCS1A02G306200 , TraesCS5A02G142100 , TraesCS5B02G140900 , TraesCS5D02G150000 , TraesCS5D02G150000 , TraesCS2A02G235500 , TraesCS5D02G480200 , TraesCS5B02G479100 , TraesCS1D02G305900 , TraesCS3B02G368600
Populus PNT34324 , PNT34325 , PNT34326 , PNT34327 , PNT34328 , PNT34329 , PNT34330 , PNT05959 , PNT05958 , PNT05957 , PNT05955 , PNT05963 , PNT05960 , PNT05961 , PNT05966 , PNT05967 , PNT05964


JBrowse

Open New Page


cDNA sequences
Sobic.001G040800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G194100 annexin, putative, expressed K17095: annexin A7/11
2 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
3 Sobic.009G001400 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
4 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
5 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
6 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
7 Sobic.002G355300 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
8 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
9 Sobic.007G088000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
10 Sobic.001G459200 MYB family transcription factor, putative, expressed -
11 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
12 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
13 Sobic.004G196300 ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
14 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
15 Sobic.003G368500 Yip1 domain containing protein, expressed -
16 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
17 Sobic.009G203100 expressed protein -
18 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
19 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
20 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E


Gene co-expression network
sample Sobic001G040800 Sobic001G040800 Sobic002G194100 Sobic002G194100 Sobic001G040800--Sobic002G194100 Sobic003G253000 Sobic003G253000 Sobic001G040800--Sobic003G253000 Sobic009G001400 Sobic009G001400 Sobic001G040800--Sobic009G001400 Sobic002G363100 Sobic002G363100 Sobic001G040800--Sobic002G363100 Sobic002G202300 Sobic002G202300 Sobic001G040800--Sobic002G202300 Sobic003G130800 Sobic003G130800 Sobic001G040800--Sobic003G130800 Sobic002G355300 Sobic002G355300 Sobic001G040800--Sobic002G355300 Sobic007G114200 Sobic007G114200 Sobic001G040800--Sobic007G114200 Sobic007G088000 Sobic007G088000 Sobic001G040800--Sobic007G088000 Sobic002G194100--Sobic001G040800 Sobic002G194100--Sobic002G202300 Sobic006G232200 Sobic006G232200 Sobic002G194100--Sobic006G232200 Sobic004G293700 Sobic004G293700 Sobic002G194100--Sobic004G293700 Sobic001G459200 Sobic001G459200 Sobic002G194100--Sobic001G459200 Sobic001G054200 Sobic001G054200 Sobic002G194100--Sobic001G054200 Sobic004G248800 Sobic004G248800 Sobic002G194100--Sobic004G248800 Sobic002G194100--Sobic003G253000 Sobic004G079100 Sobic004G079100 Sobic002G194100--Sobic004G079100 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic009G001400--Sobic007G114200 Sobic010G188100 Sobic010G188100 Sobic009G001400--Sobic010G188100 Sobic009G001400--Sobic001G040800 Sobic003G367451 Sobic003G367451 Sobic009G001400--Sobic003G367451 Sobic009G001400--Sobic002G363100 Sobic001G220400 Sobic001G220400 Sobic009G001400--Sobic001G220400 Sobic006G182100 Sobic006G182100 Sobic009G001400--Sobic006G182100 Sobic010G018400 Sobic010G018400 Sobic009G001400--Sobic010G018400 Sobic003G220600 Sobic003G220600 Sobic009G001400--Sobic003G220600 Sobic009G240900 Sobic009G240900 Sobic002G363100--Sobic009G240900 Sobic002G363100--Sobic001G040800 Sobic002G363100--Sobic009G001400 Sobic001G357300 Sobic001G357300 Sobic002G363100--Sobic001G357300 Sobic002G363100--Sobic007G114200 Sobic009G217900 Sobic009G217900 Sobic002G363100--Sobic009G217900 Sobic001G005900 Sobic001G005900 Sobic002G363100--Sobic001G005900 Sobic004G130100 Sobic004G130100 Sobic002G363100--Sobic004G130100 Sobic004G327300 Sobic004G327300 Sobic002G363100--Sobic004G327300 Sobic002G202300--Sobic003G253000 Sobic002G202300--Sobic003G220600 Sobic002G202300--Sobic006G141500 Sobic006G264300 Sobic006G264300 Sobic002G202300--Sobic006G264300 Sobic002G202300--Sobic002G046100 Sobic003G115800 Sobic003G115800 Sobic002G202300--Sobic003G115800 Sobic010G204300 Sobic010G204300 Sobic002G202300--Sobic010G204300 Sobic006G062800 Sobic006G062800 Sobic002G202300--Sobic006G062800 Sobic002G202300--Sobic006G182100 Sobic003G130800--Sobic009G185800 Sobic003G130800--Sobic003G253000 Sobic003G130800--Sobic001G459200 Sobic006G180200 Sobic006G180200 Sobic003G130800--Sobic006G180200 Sobic003G130800--Sobic002G345300 Sobic003G130800--Sobic004G049900 Sobic004G055200 Sobic004G055200 Sobic003G130800--Sobic004G055200 Sobic010G135000 Sobic010G135000 Sobic003G130800--Sobic010G135000 Sobic003G181500 Sobic003G181500 Sobic003G130800--Sobic003G181500 Sobic003G386000 Sobic003G386000 Sobic002G355300--Sobic003G386000 Sobic002G355300--Sobic001G040800 Sobic002G355300--Sobic004G055200 Sobic002G355300--Sobic006G232200 Sobic003G155400 Sobic003G155400 Sobic002G355300--Sobic003G155400 Sobic002G222900 Sobic002G222900 Sobic002G355300--Sobic002G222900 Sobic002G355300--Sobic001G459200 Sobic007G019100 Sobic007G019100 Sobic002G355300--Sobic007G019100 Sobic004G170400 Sobic004G170400 Sobic002G355300--Sobic004G170400 Sobic007G045600 Sobic007G045600 Sobic007G114200--Sobic007G045600 Sobic007G114200--Sobic003G367451 Sobic001G236300 Sobic001G236300 Sobic007G114200--Sobic001G236300 Sobic007G114200--Sobic009G001400 Sobic002G428200 Sobic002G428200 Sobic007G114200--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic007G114200--Sobic006G252200 Sobic002G214900 Sobic002G214900 Sobic007G114200--Sobic002G214900 Sobic007G114200--Sobic004G327300 Sobic004G138800 Sobic004G138800 Sobic007G114200--Sobic004G138800 Sobic003G306100 Sobic003G306100 Sobic007G088000--Sobic003G306100 Sobic007G088000--Sobic004G055200 Sobic004G187900 Sobic004G187900 Sobic007G088000--Sobic004G187900 Sobic001G281400 Sobic001G281400 Sobic007G088000--Sobic001G281400 Sobic009G141800 Sobic009G141800 Sobic007G088000--Sobic009G141800 Sobic007G088000--Sobic001G040800 Sobic007G088000--Sobic001G459200 Sobic006G099700 Sobic006G099700 Sobic007G088000--Sobic006G099700 Sobic001G499300 Sobic001G499300 Sobic007G088000--Sobic001G499300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.