Gene annotation
| Transcriptome id | Sobic.009G001400.1 |
|---|---|
| Synonym | Sb09g000340, VPS60.1 |
| Functional annotation | SNF7 domain containing protein, putative, expressed |
| UniProt | C5YXY2 |
| Pfam | PF03357 |
| Panther DB | PTHR22761 PTHR22761:SF17 |
| NCBI CDD | KOG1655; Protein involved in vacuolar protein sorting |
| KEGG Orthology | K12198; CHMP5, charged multivesicular body protein 5 |
| Gene Ontology | GO:0007034; vacuolar transport |
Orthologs (automatic annotation)
| TAIR | AT3G10640 : SNF7 family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os05g01250.1 : SNF7 domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a041012 |
| Brachypodium | KQK02771 , KQK08149 |
| Barley | HORVU0Hr1G000030.5 , HORVU0Hr1G000030.4 , HORVU0Hr1G000030.3 , HORVU0Hr1G000030.2 , HORVU0Hr1G000030.1 , HORVU0Hr1G000030.8 , HORVU3Hr1G014580.1 , HORVU3Hr1G014580.3 , HORVU3Hr1G014580.2 , HORVU3Hr1G014580.4 , HORVU3Hr1G014580.7 , HORVU3Hr1G014580.6 , HORVU3Hr1G014590.3 , HORVU3Hr1G014590.6 , HORVU3Hr1G014590.5 , HORVU3Hr1G014590.2 , HORVU3Hr1G014590.1 , HORVU0Hr1G000030.13 , HORVU0Hr1G000030.12 , HORVU0Hr1G000030.11 , HORVU3Hr1G014580.5 , HORVU0Hr1G000030.7 , HORVU0Hr1G000030.6 , HORVU0Hr1G000030.17 , HORVU0Hr1G000030.16 , HORVU0Hr1G000030.15 , HORVU0Hr1G000030.14 |
| Wheat | TraesCS1B02G008200 , TraesCS1A02G005100 , TraesCS3A02G081400 , TraesCS1B02G006600 , TraesCS1D02G002600 , TraesCS1A02G005900 , TraesCS3D02G081400 |
| Populus | - |
JBrowse
| Sobic.009G001400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G114200 | alpha-soluble NSF attachment protein, putative, expressed | K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein |
| 2 | Sobic.010G188100 | SNF7 domain containing protein, putative, expressed | K12194: CHMP4, SNF7, charged multivesicular body protein 4 |
| 3 | Sobic.001G040800 | ADP-ribosylation factor, putative, expressed | K07937: ADP-ribosylation factor 1/2 K07977: Arf/Sar family, other |
| 4 | Sobic.003G367451 | - | K08516: synaptobrevin homolog YKT6 |
| 5 | Sobic.002G363100 | eukaryotic translation initiation factor 5A, putative, expressed | K03263: translation initiation factor 5A |
| 6 | Sobic.001G220400 | SNF7 domain containing protein, putative, expressed | K12192: charged multivesicular body protein 2B |
| 7 | Sobic.006G182100 | ORM1, putative, expressed | - |
| 8 | Sobic.010G018400 | expressed protein | K02153: ATPeV0E, V-type H+-transporting ATPase subunit e |
| 9 | Sobic.003G220600 | SNF7 domain containing protein, putative, expressed | K12194: CHMP4, SNF7, charged multivesicular body protein 4 |
| 10 | Sobic.002G202300 | vesicle transport v-SNARE protein, putative, expressed | K08495: GOSR1, golgi SNAP receptor complex member 1 |
| 11 | Sobic.002G214900 | polygalacturonase, putative, expressed | - |
| 12 | Sobic.004G327300 | TMS membrane protein/tumour differentially expressed protein, putative, expressed | - |
| 13 | Sobic.003G023000 | CID11, putative, expressed | - |
| 14 | Sobic.001G283500 | VHS and GAT domain containing protein, expressed | - |
| 15 | Sobic.001G403700 | mitochondrial carrier protein, putative, expressed | K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37 |
| 16 | Sobic.003G368500 | Yip1 domain containing protein, expressed | - |
| 17 | Sobic.004G272800 | VHS and GAT domain containing protein, expressed | - |
| 18 | Sobic.002G083266 | - | K00326: cytochrome-b5 reductase |
| 19 | Sobic.007G045600 | MSP domain containing protein, expressed | - |
| 20 | Sobic.002G194100 | annexin, putative, expressed | K17095: annexin A7/11 |
Gene co-expression network
Octagon: transcription factors
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