Gene annotation
Transcriptome id Sobic.002G355300.1
Synonym Sb02g037690, Nucleotide-binding transmembrane transporter
Functional annotation "Belonging to the Sdw3 locus, Sbi_sdw3" (PubMedID : 20464438)
RNA recognition motif containing protein, putative, expressed
UniProt C5XCH7
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF332
NCBI CDD KOG4205; RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
KEGG Orthology K14411; RNA-binding protein Musashi
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G07810 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g39560.3 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016038 , Zm00025a045297 , Zm00025a045294 , Zm00025a015035 , Zm00025a045296 , Zm00025a048540
Brachypodium PNT74860 , KQK15497 , KQK15498 , KQK15499
Barley -
Wheat TraesCS2D02G197500 , TraesCS2D02G197500 , TraesCS2D02G197500 , TraesCS2B02G216600 , TraesCS2B02G216600 , TraesCS2A02G190400
Populus PNT58606


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cDNA sequences
Sobic.002G355300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G386000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
2 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
3 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
4 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
5 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
6 Sobic.002G222900 transmembrane protein 50A, putative, expressed -
7 Sobic.001G459200 MYB family transcription factor, putative, expressed -
8 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
9 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
10 Sobic.005G034400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
11 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
12 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
13 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
14 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
15 Sobic.001G533300 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
16 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
17 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
18 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
19 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
20 Sobic.001G048832 - -


Gene co-expression network
sample Sobic002G355300 Sobic002G355300 Sobic003G386000 Sobic003G386000 Sobic002G355300--Sobic003G386000 Sobic001G040800 Sobic001G040800 Sobic002G355300--Sobic001G040800 Sobic004G055200 Sobic004G055200 Sobic002G355300--Sobic004G055200 Sobic006G232200 Sobic006G232200 Sobic002G355300--Sobic006G232200 Sobic003G155400 Sobic003G155400 Sobic002G355300--Sobic003G155400 Sobic002G222900 Sobic002G222900 Sobic002G355300--Sobic002G222900 Sobic001G459200 Sobic001G459200 Sobic002G355300--Sobic001G459200 Sobic007G019100 Sobic007G019100 Sobic002G355300--Sobic007G019100 Sobic004G170400 Sobic004G170400 Sobic002G355300--Sobic004G170400 Sobic004G272800 Sobic004G272800 Sobic003G386000--Sobic004G272800 Sobic003G386000--Sobic002G355300 Sobic005G188100 Sobic005G188100 Sobic003G386000--Sobic005G188100 Sobic003G386000--Sobic003G155400 Sobic004G310300 Sobic004G310300 Sobic003G386000--Sobic004G310300 Sobic002G153500 Sobic002G153500 Sobic003G386000--Sobic002G153500 Sobic002G190900 Sobic002G190900 Sobic003G386000--Sobic002G190900 Sobic001G281400 Sobic001G281400 Sobic003G386000--Sobic001G281400 Sobic001G322500 Sobic001G322500 Sobic003G386000--Sobic001G322500 Sobic002G194100 Sobic002G194100 Sobic001G040800--Sobic002G194100 Sobic003G253000 Sobic003G253000 Sobic001G040800--Sobic003G253000 Sobic009G001400 Sobic009G001400 Sobic001G040800--Sobic009G001400 Sobic002G363100 Sobic002G363100 Sobic001G040800--Sobic002G363100 Sobic002G202300 Sobic002G202300 Sobic001G040800--Sobic002G202300 Sobic003G130800 Sobic003G130800 Sobic001G040800--Sobic003G130800 Sobic001G040800--Sobic002G355300 Sobic007G114200 Sobic007G114200 Sobic001G040800--Sobic007G114200 Sobic007G088000 Sobic007G088000 Sobic001G040800--Sobic007G088000 Sobic008G033600 Sobic008G033600 Sobic004G055200--Sobic008G033600 Sobic004G055200--Sobic001G459200 Sobic004G055200--Sobic003G130800 Sobic004G330700 Sobic004G330700 Sobic004G055200--Sobic004G330700 Sobic004G055200--Sobic001G281400 Sobic004G187900 Sobic004G187900 Sobic004G055200--Sobic004G187900 Sobic001G499300 Sobic001G499300 Sobic004G055200--Sobic001G499300 Sobic001G477300 Sobic001G477300 Sobic004G055200--Sobic001G477300 Sobic007G051000 Sobic007G051000 Sobic004G055200--Sobic007G051000 Sobic003G124800 Sobic003G124800 Sobic006G232200--Sobic003G124800 Sobic007G045600 Sobic007G045600 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic009G198500 Sobic009G198500 Sobic006G232200--Sobic009G198500 Sobic004G130100 Sobic004G130100 Sobic006G232200--Sobic004G130100 Sobic003G323600 Sobic003G323600 Sobic006G232200--Sobic003G323600 Sobic001G054200 Sobic001G054200 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic001G388200 Sobic001G388200 Sobic006G232200--Sobic001G388200 Sobic010G154700 Sobic010G154700 Sobic003G155400--Sobic010G154700 Sobic003G209000 Sobic003G209000 Sobic003G155400--Sobic003G209000 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic010G018400 Sobic010G018400 Sobic003G155400--Sobic010G018400 Sobic009G119900 Sobic009G119900 Sobic003G155400--Sobic009G119900 Sobic003G155400--Sobic007G051000 Sobic010G204500 Sobic010G204500 Sobic003G155400--Sobic010G204500 Sobic003G215700 Sobic003G215700 Sobic003G155400--Sobic003G215700 Sobic002G222900--Sobic003G155400 Sobic001G224400 Sobic001G224400 Sobic002G222900--Sobic001G224400 Sobic007G134000 Sobic007G134000 Sobic002G222900--Sobic007G134000 Sobic002G222900--Sobic010G154700 Sobic007G068000 Sobic007G068000 Sobic002G222900--Sobic007G068000 Sobic010G225300 Sobic010G225300 Sobic002G222900--Sobic010G225300 Sobic002G222900--Sobic001G459200 Sobic001G128400 Sobic001G128400 Sobic002G222900--Sobic001G128400 Sobic002G222900--Sobic007G051000 Sobic009G185800 Sobic009G185800 Sobic001G459200--Sobic009G185800 Sobic001G459200--Sobic003G253000 Sobic001G459200--Sobic001G499300 Sobic001G459200--Sobic004G055200 Sobic002G267500 Sobic002G267500 Sobic001G459200--Sobic002G267500 Sobic002G046100 Sobic002G046100 Sobic001G459200--Sobic002G046100 Sobic001G459200--Sobic004G272800 Sobic003G181500 Sobic003G181500 Sobic001G459200--Sobic003G181500 Sobic001G459200--Sobic003G130800 Sobic007G019100--Sobic007G045600 Sobic001G132100 Sobic001G132100 Sobic007G019100--Sobic001G132100 Sobic007G019100--Sobic003G323600 Sobic007G019100--Sobic009G119900 Sobic001G048832 Sobic001G048832 Sobic007G019100--Sobic001G048832 Sobic007G019100--Sobic004G170400 Sobic007G019100--Sobic007G114200 Sobic001G074700 Sobic001G074700 Sobic007G019100--Sobic001G074700 Sobic001G342200 Sobic001G342200 Sobic007G019100--Sobic001G342200 Sobic001G350600 Sobic001G350600 Sobic004G170400--Sobic001G350600 Sobic004G259200 Sobic004G259200 Sobic004G170400--Sobic004G259200 Sobic004G170400--Sobic001G074700 Sobic001G465800 Sobic001G465800 Sobic004G170400--Sobic001G465800 Sobic004G170400--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic004G170400--Sobic002G356400 Sobic004G170400--Sobic003G209000 Sobic004G170400--Sobic004G310300 Sobic002G418400 Sobic002G418400 Sobic004G170400--Sobic002G418400
Octagon: transcription factors


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