Gene annotation
Transcriptome id Sobic.003G386000.1
Synonym Sb03g042460
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
kinase, pfkB family, putative, expressed
UniProt C5XES8
Pfam PF00294
Panther DB PTHR10584 PTHR10584:SF168
NCBI CDD KOG2855; Ribokinase
KEGG Orthology K00847; E2.7.1.4, fructokinase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G31390 : pfkB-like carbohydrate kinase family protein
RAP-DB (Rice) LOC_Os01g66940.1 : kinase, pfkB family, putative, expressed
MaizeGDB (Corn) Zm00025a039461 , Zm00025a026457 , Zm00025a053461
Brachypodium KQK10996
Barley HORVU7Hr1G076150.2 , HORVU7Hr1G076150.3 , HORVU7Hr1G076150.1 , HORVU1Hr1G083470.4 , HORVU1Hr1G083470.3 , HORVU1Hr1G083470.1 , HORVU5Hr1G076230.8 , HORVU5Hr1G076230.5 , HORVU5Hr1G076230.4 , HORVU5Hr1G076230.7 , HORVU5Hr1G076230.1 , HORVU5Hr1G076230.3 , HORVU5Hr1G076230.2 , HORVU1Hr1G083470.6 , HORVU1Hr1G083470.5 , HORVU1Hr1G083470.2
Wheat TraesCS5D02G293800 , TraesCS3A02G400000 , TraesCS7A02G319000 , TraesCS5B02G285500 , TraesCS5D02G497600 , TraesCS5D02G497600 , TraesCS3B02G433000 , TraesCS3D02G394200 , TraesCS5A02G286200 , TraesCS7B02G219800
Populus -


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cDNA sequences
Sobic.003G386000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
2 Sobic.002G355300 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
3 Sobic.005G188100 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
4 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
5 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
6 Sobic.002G153500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
7 Sobic.002G190900 expressed protein -
8 Sobic.001G281400 expressed protein -
9 Sobic.001G322500 trehalase precursor, putative, expressed K01194: TREH, treA, alpha,alpha-trehalase
10 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
11 Sobic.001G048832 - -
12 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
13 Sobic.001G132100 expressed protein -
14 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.005G034400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
16 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
17 Sobic.002G126600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
18 Sobic.002G398901 - -
19 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
20 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N


Gene co-expression network
sample Sobic003G386000 Sobic003G386000 Sobic004G272800 Sobic004G272800 Sobic003G386000--Sobic004G272800 Sobic002G355300 Sobic002G355300 Sobic003G386000--Sobic002G355300 Sobic005G188100 Sobic005G188100 Sobic003G386000--Sobic005G188100 Sobic003G155400 Sobic003G155400 Sobic003G386000--Sobic003G155400 Sobic004G310300 Sobic004G310300 Sobic003G386000--Sobic004G310300 Sobic002G153500 Sobic002G153500 Sobic003G386000--Sobic002G153500 Sobic002G190900 Sobic002G190900 Sobic003G386000--Sobic002G190900 Sobic001G281400 Sobic001G281400 Sobic003G386000--Sobic001G281400 Sobic001G322500 Sobic001G322500 Sobic003G386000--Sobic001G322500 Sobic002G267500 Sobic002G267500 Sobic004G272800--Sobic002G267500 Sobic004G272800--Sobic001G281400 Sobic003G253000 Sobic003G253000 Sobic004G272800--Sobic003G253000 Sobic001G048832 Sobic001G048832 Sobic004G272800--Sobic001G048832 Sobic004G272800--Sobic002G190900 Sobic002G345300 Sobic002G345300 Sobic004G272800--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic004G272800--Sobic005G188100 Sobic002G355300--Sobic003G386000 Sobic001G040800 Sobic001G040800 Sobic002G355300--Sobic001G040800 Sobic004G055200 Sobic004G055200 Sobic002G355300--Sobic004G055200 Sobic006G232200 Sobic006G232200 Sobic002G355300--Sobic006G232200 Sobic002G355300--Sobic003G155400 Sobic002G222900 Sobic002G222900 Sobic002G355300--Sobic002G222900 Sobic001G459200 Sobic001G459200 Sobic002G355300--Sobic001G459200 Sobic007G019100 Sobic007G019100 Sobic002G355300--Sobic007G019100 Sobic004G170400 Sobic004G170400 Sobic002G355300--Sobic004G170400 Sobic005G188100--Sobic002G190900 Sobic009G163800 Sobic009G163800 Sobic005G188100--Sobic009G163800 Sobic002G398901 Sobic002G398901 Sobic005G188100--Sobic002G398901 Sobic010G204500 Sobic010G204500 Sobic005G188100--Sobic010G204500 Sobic009G166500 Sobic009G166500 Sobic005G188100--Sobic009G166500 Sobic007G051000 Sobic007G051000 Sobic005G188100--Sobic007G051000 Sobic006G047400 Sobic006G047400 Sobic005G188100--Sobic006G047400 Sobic010G012500 Sobic010G012500 Sobic005G188100--Sobic010G012500 Sobic004G211833 Sobic004G211833 Sobic005G188100--Sobic004G211833 Sobic010G154700 Sobic010G154700 Sobic003G155400--Sobic010G154700 Sobic003G209000 Sobic003G209000 Sobic003G155400--Sobic003G209000 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic010G018400 Sobic010G018400 Sobic003G155400--Sobic010G018400 Sobic009G119900 Sobic009G119900 Sobic003G155400--Sobic009G119900 Sobic003G155400--Sobic007G051000 Sobic003G155400--Sobic010G204500 Sobic003G215700 Sobic003G215700 Sobic003G155400--Sobic003G215700 Sobic004G310300--Sobic009G119900 Sobic004G259200 Sobic004G259200 Sobic004G310300--Sobic004G259200 Sobic004G310300--Sobic007G051000 Sobic001G018500 Sobic001G018500 Sobic004G310300--Sobic001G018500 Sobic004G310300--Sobic010G204500 Sobic004G310300--Sobic003G155400 Sobic004G066800 Sobic004G066800 Sobic004G310300--Sobic004G066800 Sobic001G513500 Sobic001G513500 Sobic004G310300--Sobic001G513500 Sobic004G310300--Sobic005G188100 Sobic001G224400 Sobic001G224400 Sobic002G153500--Sobic001G224400 Sobic008G189300 Sobic008G189300 Sobic002G153500--Sobic008G189300 Sobic004G284500 Sobic004G284500 Sobic002G153500--Sobic004G284500 Sobic002G153500--Sobic004G272800 Sobic004G225500 Sobic004G225500 Sobic002G153500--Sobic004G225500 Sobic001G132100 Sobic001G132100 Sobic002G153500--Sobic001G132100 Sobic008G032100 Sobic008G032100 Sobic002G153500--Sobic008G032100 Sobic007G115100 Sobic007G115100 Sobic002G153500--Sobic007G115100 Sobic004G204900 Sobic004G204900 Sobic002G153500--Sobic004G204900 Sobic002G190900--Sobic002G398901 Sobic002G190900--Sobic010G012500 Sobic002G190900--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic002G190900--Sobic009G176000 Sobic002G081600 Sobic002G081600 Sobic002G190900--Sobic002G081600 Sobic002G190900--Sobic005G188100 Sobic002G190900--Sobic001G281400 Sobic002G190900--Sobic004G211833 Sobic001G374700 Sobic001G374700 Sobic002G190900--Sobic001G374700 Sobic004G187900 Sobic004G187900 Sobic001G281400--Sobic004G187900 Sobic001G281400--Sobic002G267500 Sobic010G149300 Sobic010G149300 Sobic001G281400--Sobic010G149300 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic010G086200 Sobic010G086200 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic009G008900 Sobic009G008900 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic001G322500--Sobic003G155400 Sobic001G322500--Sobic003G386000 Sobic001G322500--Sobic001G224400 Sobic001G322500--Sobic004G170400 Sobic006G182100 Sobic006G182100 Sobic001G322500--Sobic006G182100 Sobic001G350600 Sobic001G350600 Sobic001G322500--Sobic001G350600 Sobic001G322500--Sobic005G188100 Sobic001G322500--Sobic002G190900 Sobic001G322500--Sobic002G046100
Octagon: transcription factors


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